CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014111.1-P	Field mustard	mitochondrion	80.0	58.74
CDY60217	Canola	extracellular	87.62	53.49
CDY05042	Canola	cytosol	60.0	22.91
CDX77349	Canola	mitochondrion	64.76	17.44
PGSC0003DMT400018765	Potato	cytosol	24.76	11.35
Zm00001d005948_P001	Maize	golgi, plasma membrane, plastid	43.81	11.0
CDY70211	Canola	plastid	51.43	9.78
CDX90708	Canola	plastid	66.67	9.31
AT4G09020.1	Thale cress	plastid	67.62	9.29
GSMUA_Achr9P14980_001	Banana	cytosol	58.1	8.53
KRH53006	Soybean	plastid	61.9	8.42
Solyc06g009220.2.1	Tomato	plastid	59.05	8.39
KRH62296	Soybean	plastid	61.9	8.3
TraesCS5A01G248700.1	Wheat	plastid	60.95	8.26
TraesCS5D01G255800.1	Wheat	plastid	60.95	8.25
TraesCS5B01G246400.1	Wheat	plastid	60.95	8.25
VIT_18s0001g06520.t01	Wine grape	plastid	60.0	8.13
HORVU5Hr1G070160.1	Barley	plastid	60.0	8.12
KXG35819	Sorghum	plastid	60.0	8.12
PGSC0003DMT400018766	Potato	cytosol	19.05	8.1
CDX74820	Canola	plastid	40.0	5.34
CDY20500	Canola	plastid	39.05	5.23
CDY15458	Canola	cytosol	32.38	4.64
CDX89902	Canola	plastid	30.48	3.8
CDY18165	Canola	plastid	29.52	3.79
CDX86680	Canola	plastid	29.52	3.74
CDY47998	Canola	cytosol	12.38	2.0
CDX70233	Canola	plastid	14.29	1.56
CDY51316	Canola	plastid	13.33	1.44
Os09t0469400-01	Rice	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDX77333	EnsemblPlantsGene:GSBRNA2T00128112001	Gene3D:3.20.20.80	GO:A0A078CQF4	InterPro:Glycoside_hydrolase_SF	PANTHER:PTHR43002
PANTHER:PTHR43002:SF3	ProteinID:CDX77333	ProteinID:CDX77333.1	SUPFAM:SSF51445	UniParc:UPI0004EE88DE	MapMan:35.1

Description

BnaC08g03780D

Coordinates

chrLK031810:+:1656614..1657252

Molecular Weight (calculated)

12476.1 Da

IEP (calculated)

10.203

GRAVY (calculated)

-0.390

Length

105 amino acids

Sequence
(BLAST)

001: MDYCFKFRWA EWNGMYRDDV RRFIKGMKGS FATRVAGSFD LYQVNQRKPP YHGVNFINAH DGFTLRDHTI LRGNWQMKNF HLALMISQVK PLPTYMNDIV
101: VNNLI

Best Arabidopsis Sequence Match ( AT4G09020.1 )
(BLAST)

001: MLTSPSSSST YDPFSSNFSP SLTNAFSSSF TIPMGLKLSR RVTRARIFSR KIKDRSTLKV TCRRAHERVV EEEASTMTET KLFKVSSGEV SPLGVSQVDK
101: GINFALFSQN ATSVTLCLSL SQSGKDDTDD DGMIELVLDP SVNKTGDTWH ICVEDLPLNN VLYGYRVDGP GEWQQGHRFD RSILLLDPYA KLVKGHSSFG
201: DSSQKFAQFY GTYDFESSPF DWGDDYKFPN IPEKDLVIYE MNVRAFTADE SSGMDPAIGG SYLGFIEKIP HLQDLGINAV ELLPVFEFDE LELQRRSNPR
301: DHMVNTWGYS TVNFFAPMSR YASGEGDPIK ASKEFKEMVK ALHSAGIEVI LDVVYNHTNE ADDKYPYTTS FRGIDNKVYY MLDPNNQLLN FSGCGNTLNC
401: NHPVVMELIL DSLRHWVTEY HVDGFRFDLA SVLCRATDGS PLSAPPLIRA IAKDSVLSRC KIIAEPWDCG GLYLVGKFPN WDRWAEWNGM YRDDVRRFIK
501: GDSGMKGSFA TRVSGSSDLY QVNQRKPYHG VNFVIAHDGF TLRDLVSYNF KHNEANGEGG NDGCNDNHSW NCGFEGETGD AHIKSLRTRQ MKNFHLALMI
601: SQGTPMMLMG DEYGHTRYGN NNSYGHDTSL NNFQWKELDA KKQNHFRFFS EVIKFRHSHH VLKHENFLTQ GEITWHEDNW DNSESKFLAF TLHDGIGGRD
701: IYVAFNAHDY FVKALIPQPP PGKQWFRVAD TNLESPDDFV REGVAGVADT YNVAPFSSIL LQSK

Arabidopsis Description

ISA3Isoamylase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M0S5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.