Factsheet for TraesCS5D01G255800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G246400.1	Wheat	plastid	96.91	96.91
TraesCS5A01G248700.1	Wheat	plastid	93.43	93.55
HORVU5Hr1G070160.1	Barley	plastid	92.14	92.14
KXG35819	Sorghum	plastid	78.87	78.87
Os09t0469400-01	Rice	plastid	34.15	78.17
Zm00001d005949_P001	Maize	cytosol, mitochondrion, vacuole	27.58	76.7
Zm00001d020799_P003	Maize	mitochondrion	77.84	75.31
GSMUA_Achr9P14980_001	Banana	cytosol	67.91	73.71
CDY05042	Canola	cytosol	25.39	71.64
PGSC0003DMT400018765	Potato	cytosol	21.13	71.62
CDX90708	Canola	plastid	65.08	67.15
Bra000667.1-P	Field mustard	plastid	61.98	66.81
CDY70211	Canola	plastid	47.42	66.67
VIT_18s0001g06520.t01	Wine grape	plastid	66.49	66.58
AT4G09020.1	Thale cress	plastid	65.46	66.49
KRH53006	Soybean	plastid	66.11	66.45
Solyc06g009220.2.1	Tomato	plastid	62.63	65.76
KRH62296	Soybean	plastid	65.08	64.5
CDX77333	Canola	cytosol	8.25	60.95
CDX77349	Canola	mitochondrion	29.25	58.21
Bra014108.1-P	Field mustard	cytosol	15.34	57.49
Bra014111.1-P	Field mustard	mitochondrion	10.31	55.94
PGSC0003DMT400018766	Potato	cytosol	17.27	54.25
CDY60217	Canola	extracellular	10.18	45.93
TraesCS7D01G249500.1	Wheat	mitochondrion, plastid	39.56	38.81
TraesCS1D01G246300.1	Wheat	plastid	30.67	30.16
TraesCS7D01G133100.1	Wheat	golgi	14.05	11.32

Protein Annotations

Gene3D:2.60.40.10	Gene3D:2.60.40.1180	MapMan:3.2.2.6	MapMan:3.2.3.3.2.1	Gene3D:3.20.20.80	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
InterPro:Glyco_hydro_13_N	InterPro:Glyco_hydro_13_cat_dom	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	InterPro:IPR013783
InterPro:Ig-like_fold	InterPro:Ig_E-set	PFAM:PF00128	PFAM:PF02922	PANTHER:PTHR43002	SMART:SM00642
SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF81296	EnsemblPlantsGene:TraesCS5D01G255800	EnsemblPlants:TraesCS5D01G255800.1	TIGR:cd02856
TIGR:cd11326	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5D:-:362055887..362066416

Molecular Weight (calculated)

86231.3 Da

IEP (calculated)

6.509

GRAVY (calculated)

-0.439

Length

776 amino acids

Sequence
(BLAST)

001: MDSAASTNRS PLRPAAAATA TARRSSSSVR PALPNRVAAS RLGVAPGCGG GQFGKAQRFG SVRSTLARAQ TGNAGRIVTE ERESAMAGTE MPLKYSSGKA
101: SPLGVSQDES GLNFAIFSQH ASSVTLCIKL PERGTKDEES EKAVEFALDC QKNKTGDIWH VSVEGLPTSG VLYGYRVNGP QGWEQGHRFD SNIVLLDPYA
201: KLVSGRNYFG LDKGPSQPFG TYDFDSSPFD WGADYQLPNL PETDLVIYEM NVRAFTADES SGLDPAVRGS YLGFIDKIPH LLELGVNAVE LLPVFEFDEL
301: EFKRYPNPRD HMVNTWGYST INFFAPMTRY ASAGGGPLAA SRELKQMVKA LHKAGIEVIL DVVYNHTNEA DDANPYVTSF RGIDNKVYYM LDPKNNSQLL
401: NFSGCGNTLN CNHPVVMELV LDSLRHWVKE YHIDGFRFDL ASVLCRGPDG SPLDAPPLIR EIAKDSVLSR CKIIAEPWDC GGLYLVGRFP NWDRWAEWNG
501: KYRDDLRRFI KGDPGMKGVL ATRVSGSADL YQVNQRKPHH GVNFIIAHDG FTLCDLVSYN LKHNDANGEG GRDGCNDNFS WNCGVEGETN DSNVLALRSR
601: QMKNFHVALM ISQGTPMMLM GDEYGHTRYG NNNSYGHDTC INNFQWGQLA ERRYGHFRFF SEMIKFRQNH PILKRDRFLS KNDVTWHEDC WDNLESKFLA
701: FTIHDHNSGG DIYLAFNAHD YSVDAVIPPA PQQKHWNRVV DTNLESPNDI APEGVPLTGS GYRIAPFSSI LLKASP

Best Arabidopsis Sequence Match ( AT4G09020.1 )
(BLAST)

001: MLTSPSSSST YDPFSSNFSP SLTNAFSSSF TIPMGLKLSR RVTRARIFSR KIKDRSTLKV TCRRAHERVV EEEASTMTET KLFKVSSGEV SPLGVSQVDK
101: GINFALFSQN ATSVTLCLSL SQSGKDDTDD DGMIELVLDP SVNKTGDTWH ICVEDLPLNN VLYGYRVDGP GEWQQGHRFD RSILLLDPYA KLVKGHSSFG
201: DSSQKFAQFY GTYDFESSPF DWGDDYKFPN IPEKDLVIYE MNVRAFTADE SSGMDPAIGG SYLGFIEKIP HLQDLGINAV ELLPVFEFDE LELQRRSNPR
301: DHMVNTWGYS TVNFFAPMSR YASGEGDPIK ASKEFKEMVK ALHSAGIEVI LDVVYNHTNE ADDKYPYTTS FRGIDNKVYY MLDPNNQLLN FSGCGNTLNC
401: NHPVVMELIL DSLRHWVTEY HVDGFRFDLA SVLCRATDGS PLSAPPLIRA IAKDSVLSRC KIIAEPWDCG GLYLVGKFPN WDRWAEWNGM YRDDVRRFIK
501: GDSGMKGSFA TRVSGSSDLY QVNQRKPYHG VNFVIAHDGF TLRDLVSYNF KHNEANGEGG NDGCNDNHSW NCGFEGETGD AHIKSLRTRQ MKNFHLALMI
601: SQGTPMMLMG DEYGHTRYGN NNSYGHDTSL NNFQWKELDA KKQNHFRFFS EVIKFRHSHH VLKHENFLTQ GEITWHEDNW DNSESKFLAF TLHDGIGGRD
701: IYVAFNAHDY FVKALIPQPP PGKQWFRVAD TNLESPDDFV REGVAGVADT YNVAPFSSIL LQSK

Arabidopsis Description

ISA3Isoamylase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M0S5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.