Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77349 | Canola | mitochondrion | 97.45 | 68.72 |
| CDX77333 | Canola | cytosol | 22.91 | 60.0 |
| PGSC0003DMT400018766 | Potato | cytosol | 44.73 | 49.8 |
| CDY60217 | Canola | extracellular | 22.91 | 36.63 |
| CDX90708 | Canola | plastid | 96.0 | 35.11 |
| AT4G09020.1 | Thale cress | plastid | 86.55 | 31.15 |
| GSMUA_Achr9P14980_001 | Banana | cytosol | 69.45 | 26.71 |
| KRH53006 | Soybean | plastid | 73.45 | 26.17 |
| VIT_18s0001g06520.t01 | Wine grape | plastid | 72.36 | 25.68 |
| TraesCS5A01G248700.1 | Wheat | plastid | 71.64 | 25.42 |
| KRH62296 | Soybean | plastid | 72.36 | 25.42 |
| TraesCS5D01G255800.1 | Wheat | plastid | 71.64 | 25.39 |
| TraesCS5B01G246400.1 | Wheat | plastid | 71.64 | 25.39 |
| HORVU5Hr1G070160.1 | Barley | plastid | 70.91 | 25.13 |
| KXG35819 | Sorghum | plastid | 69.45 | 24.61 |
| Solyc06g009220.2.1 | Tomato | plastid | 62.55 | 23.27 |
| Zm00001d005948_P001 | Maize | golgi, plasma membrane, plastid | 32.73 | 21.53 |
| CDX74820 | Canola | plastid | 45.09 | 15.76 |
| CDY20500 | Canola | plastid | 44.36 | 15.56 |
| CDY70211 | Canola | plastid | 22.91 | 11.41 |
| PGSC0003DMT400018765 | Potato | cytosol | 9.09 | 10.92 |
| CDY15458 | Canola | cytosol | 26.91 | 10.1 |
| CDY18165 | Canola | plastid | 26.91 | 9.05 |
| CDX89902 | Canola | plastid | 27.27 | 8.91 |
| CDX86680 | Canola | plastid | 26.18 | 8.7 |
| CDY47998 | Canola | cytosol | 9.82 | 4.15 |
| CDY51316 | Canola | plastid | 10.91 | 3.09 |
| CDX70233 | Canola | plastid | 10.55 | 3.01 |
| Os09t0469400-01 | Rice | plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY05042 | EnsemblPlantsGene:GSBRNA2T00119792001 | Gene3D:2.60.40.1180 | Gene3D:3.20.20.80 | GO:A0A078EVS4 | InterPro:Glyco_hydro_b |
| InterPro:Glycoside_hydrolase_SF | InterPro:IPR013780 | PANTHER:PTHR43002 | ProteinID:CDY05042 | ProteinID:CDY05042.1 | SEG:seg |
| SUPFAM:SSF51011 | SUPFAM:SSF51445 | UniParc:UPI0004EEA80F | MapMan:3.2.2.6 | MapMan:3.2.3.3.2.1 | : |
Description
BnaC03g28400D
Coordinates
chrLK031959:+:209410..211070
Molecular Weight (calculated)
31301.5 Da
IEP (calculated)
6.677
GRAVY (calculated)
-0.606
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MYRDDVRRFI KGDCGMKGSF ATRVSGSSDL YQVNQRKPYH GVNFIIAHDG FTLRDLVTYN SKHNEANGEG ENDGCNDNYS WNCGSEGETG DAHIKSLRVR
101: QMKNFHLALM ISQGTPMMLM GDEYGHTRYG NNNSYGHDTA LNNFQWKEAS LNISRHFRFF SELIKFRHSH HVLKHENFLS KGEITWHEDN WDNPESKFLA
201: FTLHDGVSGQ DVYAAFNAHD YFVKALIPLP PSGKQWFRVA DTNLESPDDF IKEGVAGVAE AYNVAPFSSI LLKSM
101: QMKNFHLALM ISQGTPMMLM GDEYGHTRYG NNNSYGHDTA LNNFQWKEAS LNISRHFRFF SELIKFRHSH HVLKHENFLS KGEITWHEDN WDNPESKFLA
201: FTLHDGVSGQ DVYAAFNAHD YFVKALIPLP PSGKQWFRVA DTNLESPDDF IKEGVAGVAE AYNVAPFSSI LLKSM
001: MDAIKCSSSF LHHTKLNTLF SNHTFPKISA PNFKPLFRPI SISAKDRRSN EAENIAVVEK PLKSDRFFIS DGLPSPFGPT VRDDGVNFSV YSTNSVSATI
101: CLISLSDLRQ NKVTEEIQLD PSRNRTGHVW HVFLRGDFKD MLYGYRFDGK FSPEEGHYYD SSNILLDPYA KAIISRDEFG VLGPDDNCWP QMACMVPTRE
201: EEFDWEGDMH LKLPQKDLVI YEMHVRGFTR HESSKIEFPG TYQGVAEKLD HLKELGINCI ELMPCHEFNE LEYYSYNTIL GDHRVNFWGY STIGFFSPMI
301: RYASASSNNF AGRAINEFKI LVKEAHKRGI EVIMDVVLNH TAEGNEKGPI FSFRGVDNSV YYMLAPKGEF YNYSGCGNTF NCNHPVVRQF ILDCLRYWVT
401: EMHVDGFRFD LGSIMSRSSS LWDAANVYGA DVEGDLLTTG TPISCPPVID MISNDPILRG VKLIAEAWDA GGLYQVGMFP HWGIWSEWNG KFRDVVRQFI
501: KGTDGFSGAF AECLCGSPNL YQGGRKPWHS INFICAHDGF TLADLVTYNN KNNLANGEEN NDGENHNYSW NCGEEGDFAS ISVKRLRKRQ MRNFFVSLMV
601: SQGVPMIYMG DEYGHTKGGN NNTYCHDNYM NYFRWDKKEE AHSDFFRFCR ILIKFRDECE SLGLNDFPTA KRLQWHGLAP EIPNWSETSR FVAFSLVDSV
701: KKEIYVAFNT SHLATLVSLP NRPGYRWEPF VDTSKPSPYD CITPDLPERE TAMKQYRHFL DANVYPMLSY SSIILLLSPI KDP
101: CLISLSDLRQ NKVTEEIQLD PSRNRTGHVW HVFLRGDFKD MLYGYRFDGK FSPEEGHYYD SSNILLDPYA KAIISRDEFG VLGPDDNCWP QMACMVPTRE
201: EEFDWEGDMH LKLPQKDLVI YEMHVRGFTR HESSKIEFPG TYQGVAEKLD HLKELGINCI ELMPCHEFNE LEYYSYNTIL GDHRVNFWGY STIGFFSPMI
301: RYASASSNNF AGRAINEFKI LVKEAHKRGI EVIMDVVLNH TAEGNEKGPI FSFRGVDNSV YYMLAPKGEF YNYSGCGNTF NCNHPVVRQF ILDCLRYWVT
401: EMHVDGFRFD LGSIMSRSSS LWDAANVYGA DVEGDLLTTG TPISCPPVID MISNDPILRG VKLIAEAWDA GGLYQVGMFP HWGIWSEWNG KFRDVVRQFI
501: KGTDGFSGAF AECLCGSPNL YQGGRKPWHS INFICAHDGF TLADLVTYNN KNNLANGEEN NDGENHNYSW NCGEEGDFAS ISVKRLRKRQ MRNFFVSLMV
601: SQGVPMIYMG DEYGHTKGGN NNTYCHDNYM NYFRWDKKEE AHSDFFRFCR ILIKFRDECE SLGLNDFPTA KRLQWHGLAP EIPNWSETSR FVAFSLVDSV
701: KKEIYVAFNT SHLATLVSLP NRPGYRWEPF VDTSKPSPYD CITPDLPERE TAMKQYRHFL DANVYPMLSY SSIILLLSPI KDP
Arabidopsis Description
ISA1ISA1 [Source:UniProtKB/TrEMBL;Acc:A0A178VW25]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.