CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89902	Canola	plastid	86.55	84.09
CDY15458	Canola	cytosol	65.04	72.58
AT1G03310.2	Thale cress	plastid	72.0	66.78
CDX86680	Canola	plastid	65.53	64.73
GSMUA_Achr6P16200_001	Banana	cytosol, plasma membrane, vacuole	31.54	50.69
HORVU1Hr1G062690.3	Barley	cytosol	43.28	49.24
KRG95479	Soybean	mitochondrion	51.1	48.32
Os05t0393700-01	Rice	cytosol, plastid	43.52	47.91
VIT_07s0104g00370.t01	Wine grape	plasma membrane, plastid, vacuole	51.34	47.62
KRH67160	Soybean	plastid	50.37	47.58
GSMUA_Achr6P16190_001	Banana	cytosol, plasma membrane, vacuole	43.89	47.49
TraesCS1A01G247100.1	Wheat	mitochondrion, plastid	44.13	45.52
OQU77947	Sorghum	plastid	44.13	45.12
TraesCS1B01G257700.1	Wheat	mitochondrion, plastid	43.4	45.05
Solyc09g064800.1.1	Tomato	plastid	47.68	45.03
TraesCS1D01G246300.1	Wheat	plastid	43.4	44.99
PGSC0003DMT400002502	Potato	plastid	48.04	44.76
Zm00001d038121_P001	Maize	plastid	43.89	40.84
CDY70211	Canola	plastid	21.88	32.43
CDX90708	Canola	plastid	28.36	30.85
CDX77333	Canola	cytosol	3.79	29.52
CDY05042	Canola	cytosol	9.05	26.91
CDY20500	Canola	plastid	25.67	26.79
CDY60217	Canola	extracellular	5.62	26.74
CDX74820	Canola	plastid	25.67	26.68
CDX77349	Canola	mitochondrion	11.74	24.62
CDY51316	Canola	plastid	11.0	9.28
CDX70233	Canola	plastid	10.76	9.14
CDY47998	Canola	cytosol	4.77	6.0

Protein Annotations

Gene3D:2.60.40.10	Gene3D:2.60.40.1180	MapMan:3.2.2.6	MapMan:3.2.3.3.2.1	Gene3D:3.20.20.80	GO:A0A078FUK8
UniProt:A0A078FUK8	EnsemblPlants:CDY18165	ProteinID:CDY18165	ProteinID:CDY18165.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00002689001
InterPro:Glyco_hydro_13_N	InterPro:Glyco_hydro_13_cat_dom	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	InterPro:IPR013783
InterPro:Ig-like_fold	InterPro:Ig_E-set	PFAM:PF00128	PFAM:PF02922	PANTHER:PTHR43002	PANTHER:PTHR43002:SF2
SMART:SM00642	SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF81296	UniParc:UPI0004EDB901	SEG:seg

Description

BnaC05g01880DBnaC05g01880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FUK8]

Coordinates

chrLK032083:+:127260..130559

Molecular Weight (calculated)

91837.7 Da

IEP (calculated)

6.094

GRAVY (calculated)

-0.300

Length

818 amino acids

Sequence
(BLAST)

001: MAVWSPSVGI GGSCCLLNNG ITEAWRFPST CFSTCNNKTK RGSKTLRVTS ALQSYHRLSK ILASKTSTEL KEEISARSAQ VDDLKKVTTS YSFRTKSGAL
101: VKVKVENKRD KYSIMVYVSS LELSGYSQTH TTETPFVKGS LSESKLGLEF DGKESPFYLS FRLKNPNGGL EMLTHRDIKF CVPVGFTAGH PLPLGLSSGP
201: DDDNSWNFAF FSRNAKSVVL CLYDDTTTDK PALELDLDPY VNRTGDVWHA SVEKTWEFVR YGYCCHSEEE VEAEDIVLDP YARVIEKSIS QKFLGSLSKS
301: PSFDWGRDAS PNIPLEKLNV YRLNVKGFTQ HKSSKLPTNI AGTFTGVAER VNHLKTLGAN AVLLEPIFSF SEQQGPYFPF HFFSPMDMYG PSNSMKEMVK
401: RLHSEGIEVL LEVVFTHTAD SGALHGIDDS CYYLDSKSYL NCNFPVVQEL VLESLRYWVT EFHVDGFSFI NASSLLRGVH GEHLSRPPLV EAISFDPLLA
501: GRKLIADCWD PHDMKMPKEV RFPHWKRWGE VNTRYCRNVR NFLRGRGLLS DLATRICGSG DVFTDGRGPA FSFNYISRNS GFSLVDLVSF SGPEVASELS
601: WNCGEEGATN KSAVLQTRLK QIRNFLFIQY VSLGIPVLNM GDECGVSTKG LGSRKAFDWN MLASAFGVQI TQFISFMTSV RARRSDVFQR RDFLKPENIV
701: WYANDQTTPK WEDPGSKFLA LEIKAETEEE TTASLNNDLF IGFNASDQPE NVILPSLPSG RKWRRLVDTA LPFPGFFSVE GETVVAEEEE EEEEMNQPVM
801: YEMKPYSCTL FETINATA

Best Arabidopsis Sequence Match ( AT1G03310.2 )
(BLAST)

001: MAAWSPSVGI GSCCLNNGIT RTWKFPSARL FTGRKNKIKL GSETLMFTRK RFMGDLVTSA LQSYQFSKIC ASKTSIELRE ALSSRRAEAD DLKKVTSYSF
101: RTKAGALVKV KVEKKREKYS ILVYVSSLEL SGDDKSRLVM VWGVYRSDSS CFLPLDFENS SQDSQTHTTE TTFVKSSLSE LMLGLEFDGK ESPFYLSFHL
201: KLVSGRDPDG QEMLTHRDTD FCIPVGFTAG HPLPLGLSSG PDDDSWNFSF FSRSSTNVVL CLYDDSTTDK PALELDLDPY VNRTGDVWHA SVDNTWDFVR
301: YGYRCKETAH SKEDVDVEGE PIVLDPYATV VGKSVSQKYL GSLSKSPSFD WGEDVSPNIP LEKLLVYRLN VKGFTQHRSS KLPSNVAGTF SGVAEKVSHL
401: KTLGTNAVLL EPIFSFSEQK GPYFPFHFFS PMDIYGPSNS LESAVNSMKV MVKKLHSEGI EVLLEVVFTH TADSGALRGI DDSSYYYKGR ANDLDSKSYL
501: NCNYPVVQQL VLESLRYWVT EFHVDGFCFI NASSLLRGVH GEQLSRPPLV EAIAFDPLLA ETKLIADCWD PLEMMPKEVR FPHWKRWAEL NTRYCRNVRN
601: FLRGRGVLSD LATRICGSGD VFTDGRGPAF SFNYISRNSG LSLVDIVSFS GPELASELSW NCGEEGATNK SAVLQRRLKQ IRNFLFIQYI SLGVPVLNMG
701: DECGISTRGS PLLESRKPFD WNLLASAFGT QITQFISFMT SVRARRSDVF QRRDFLKPEN IVWYANDQTT PKWEDPASKF LALEIKSESE EEETASLAEP
801: NEPKSNDLFI GFNASDHPES VVLPSLPDGS KWRRLVDTAL PFPGFFSVEG ETVVAEEPLQ QLVVYEMKPY SCTLFETINT TA

Arabidopsis Description

ISA2ISA2 [Source:UniProtKB/TrEMBL;Acc:A0A178WGA8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.