Factsheet for VIT_07s0104g00370.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, vacuole

Predictor Summary:

nucleus 1
plastid 3
vacuole 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95479	Soybean	mitochondrion	58.05	59.19
KRH67160	Soybean	plastid	57.14	58.2
Bra030528.1-P	Field mustard	cytosol	47.96	57.47
PGSC0003DMT400002502	Potato	plastid	56.24	56.49
CDY15458	Canola	cytosol	46.94	56.48
GSMUA_Achr6P16200_001	Banana	cytosol, plasma membrane, vacuole	32.43	56.19
Solyc09g064800.1.1	Tomato	plastid	54.65	55.66
GSMUA_Achr6P16190_001	Banana	cytosol, plasma membrane, vacuole	46.83	54.63
HORVU1Hr1G062690.3	Barley	cytosol	43.42	53.27
CDX89902	Canola	plastid	50.68	53.09
AT1G03310.2	Thale cress	plastid	52.95	52.95
Os05t0393700-01	Rice	cytosol, plastid	43.88	52.09
CDY18165	Canola	plastid	47.62	51.34
Bra033388.1-P	Field mustard	plastid	49.32	51.3
CDX86680	Canola	plastid	47.28	50.36
TraesCS1A01G247100.1	Wheat	mitochondrion, plastid	45.12	50.19
TraesCS1D01G246300.1	Wheat	plastid	44.1	49.3
TraesCS1B01G257700.1	Wheat	mitochondrion, plastid	43.99	49.24
OQU77947	Sorghum	plastid	44.44	49.0
Zm00001d038121_P001	Maize	plastid	43.76	43.91
VIT_18s0001g06520.t01	Wine grape	plastid	27.78	31.61
VIT_11s0078g00310.t01	Wine grape	extracellular, golgi	18.59	30.43
VIT_11s0078g00380.t01	Wine grape	cytosol	8.05	22.98
VIT_13s0019g05160.t01	Wine grape	plastid	10.54	9.73

Protein Annotations

EntrezGene:100244186	wikigene:100244186	Gene3D:2.60.40.10	Gene3D:2.60.40.1180	MapMan:3.2.2.6	MapMan:3.2.3.3.2.1
Gene3D:3.20.20.80	ProteinID:CCB56821	ProteinID:CCB56821.1	ncoils:Coil	UniProt:F6HQ64	EMBL:FN596005
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005975	GO:GO:0005977	GO:GO:0005983	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0010021	GO:GO:0016787	GO:GO:0019156	GO:GO:0043033	InterPro:Glyco_hydro_13_N	InterPro:Glyco_hydro_13_cat_dom
InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set
EntrezGene:LOC100244186	wikigene:LOC100244186	PFAM:PF00128	PFAM:PF02922	PANTHER:PTHR43002	PANTHER:PTHR43002:SF2
SMART:SM00642	SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF81296	UniParc:UPI00015CB19C	ArrayExpress:VIT_07s0104g00370
EnsemblPlantsGene:VIT_07s0104g00370	EnsemblPlants:VIT_07s0104g00370.t01	unigene:Vvi.21992	RefSeq:XP_002271798	RefSeq:XP_002271798.1	SEG:seg

Description

No Description!

Coordinates

chr7:+:1631457..1634295

Molecular Weight (calculated)

98688.2 Da

IEP (calculated)

6.264

GRAVY (calculated)

-0.221

Length

882 amino acids

Sequence
(BLAST)

001: MTTLIPSLVI RPCCVNCGAR DSSKLVAATH YICGNKVAHG LEKMDLERKE ILGVVAQNAT RNCFRNINWK VSATSHIAIE ETENRYSTTE SEELESRLNY
101: LFLTEIGGQV KVIVGKKNKK YIVSIEVSSL QLYNSDNKLI LSWGVFRSNS SCFMPVDFQN LVPEVGSNTT EIPFMERSSG SFALKLDFEA NHAPFYLSFL
201: LKSTLDTDLS SSDIRSHRKT NFCIPVGFGR GYPAPLGLSF SSDGSPNFAF FSRNAGGVVL CLYDGTSDKP ALEIDLDPYV NRTGDIWHAS MESVGSFVSY
301: GYRCKEANLQ DSGETLHTEH VHLDPYAKLI RNSFSDDHGL KPQPRLGELQ KEPAFNWNDD VHPYIPMEKL VVYRLNVMHF TKDESSQVAS DLAGTFSGLM
401: EKLHHFKDLG VNAVLLEPIF SFDEQKGPYF PFHFFSPMNV YGPSSGPVST INSVKEMVKR LHANGIEVLL EVVFTHTAES GALQGIDDSC YYYVNGDADL
501: GIRNALNCNY SIVQQMIVDS LRYWVTEFHV DGFCFINASS LLRGFHGEYL SRPPLVETIA FDPLLSKTKI IADCWDPRNM LPKEIRFPHW KRWAEVNTRF
601: CNDVRNFLRG EGLSDFATRL CGSGDIFMDG RGPAFSFNFT TKNFGLPLVD LVSFSSSELA SELSWNCGDE GPTNKTTVLE RRLKQIRNFL FILYVSLGVP
701: ILNMGDECGQ SSGGSPAYGD RKPFNWNSVK TGFGIQTIQF ISFLSSLRSR RSDLLQRRSF LKEESIDWHG SDQSPPRWDD PSSKFLAMTL KAENMEGQLP
801: SESSSIKGDL FIAFNTADRS VKVILPPPPT GMVWHRLVDT ALPFPGFFTA DGEAILKKKS GLVTYKMESH SCALFEANTL DG

Best Arabidopsis Sequence Match ( AT1G03310.2 )
(BLAST)

001: MAAWSPSVGI GSCCLNNGIT RTWKFPSARL FTGRKNKIKL GSETLMFTRK RFMGDLVTSA LQSYQFSKIC ASKTSIELRE ALSSRRAEAD DLKKVTSYSF
101: RTKAGALVKV KVEKKREKYS ILVYVSSLEL SGDDKSRLVM VWGVYRSDSS CFLPLDFENS SQDSQTHTTE TTFVKSSLSE LMLGLEFDGK ESPFYLSFHL
201: KLVSGRDPDG QEMLTHRDTD FCIPVGFTAG HPLPLGLSSG PDDDSWNFSF FSRSSTNVVL CLYDDSTTDK PALELDLDPY VNRTGDVWHA SVDNTWDFVR
301: YGYRCKETAH SKEDVDVEGE PIVLDPYATV VGKSVSQKYL GSLSKSPSFD WGEDVSPNIP LEKLLVYRLN VKGFTQHRSS KLPSNVAGTF SGVAEKVSHL
401: KTLGTNAVLL EPIFSFSEQK GPYFPFHFFS PMDIYGPSNS LESAVNSMKV MVKKLHSEGI EVLLEVVFTH TADSGALRGI DDSSYYYKGR ANDLDSKSYL
501: NCNYPVVQQL VLESLRYWVT EFHVDGFCFI NASSLLRGVH GEQLSRPPLV EAIAFDPLLA ETKLIADCWD PLEMMPKEVR FPHWKRWAEL NTRYCRNVRN
601: FLRGRGVLSD LATRICGSGD VFTDGRGPAF SFNYISRNSG LSLVDIVSFS GPELASELSW NCGEEGATNK SAVLQRRLKQ IRNFLFIQYI SLGVPVLNMG
701: DECGISTRGS PLLESRKPFD WNLLASAFGT QITQFISFMT SVRARRSDVF QRRDFLKPEN IVWYANDQTT PKWEDPASKF LALEIKSESE EEETASLAEP
801: NEPKSNDLFI GFNASDHPES VVLPSLPDGS KWRRLVDTAL PFPGFFSVEG ETVVAEEPLQ QLVVYEMKPY SCTLFETINT TA

Arabidopsis Description

ISA2ISA2 [Source:UniProtKB/TrEMBL;Acc:A0A178WGA8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.