Factsheet for VIT_11s0078g00310.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

plastid 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400053345	Potato	cytosol	45.64	84.83
GSMUA_Achr9P14020_001	Banana	plasma membrane, vacuole	77.92	60.17
Solyc07g014590.2.1	Tomato	extracellular	80.89	55.4
Os08t0520900-00	Rice	cytosol, plastid	74.4	55.31
KRH41413	Soybean	plastid	78.85	53.26
CDY20500	Canola	plastid	76.81	52.81
CDX74820	Canola	plastid	76.62	52.48
AT2G39930.1	Thale cress	plastid	76.07	52.36
Bra005001.1-P	Field mustard	plastid	76.44	50.99
TraesCS7A01G251400.1	Wheat	mitochondrion, plastid	74.58	50.89
TraesCS7B01G139700.2	Wheat	plastid	74.4	50.76
TraesCS7D01G249500.1	Wheat	mitochondrion, plastid	74.21	50.57
KXG25605	Sorghum	plastid	73.84	50.25
Zm00001d049753_P001	Maize	mitochondrion, plastid	63.27	40.89
Zm00001d052844_P001	Maize	cytosol	12.8	40.35
HORVU7Hr1G051710.1	Barley	vacuole	33.4	35.71
VIT_18s0001g06520.t01	Wine grape	plastid	44.71	31.1
VIT_07s0104g00370.t01	Wine grape	plasma membrane, plastid, vacuole	30.43	18.59
Zm00001d050532_P001	Maize	extracellular	13.91	18.47
Zm00001d016045_P001	Maize	plastid	10.02	14.63
Zm00001d024985_P004	Maize	plastid	5.38	12.89
VIT_13s0019g05160.t01	Wine grape	plastid	14.66	8.26
VIT_11s0078g00380.t01	Wine grape	cytosol	1.86	3.24

Protein Annotations

EntrezGene:100261768	wikigene:100261768	Gene3D:2.60.40.1180	MapMan:3.2.2.6	MapMan:3.2.3.3.2.1	Gene3D:3.20.20.80
EMBL:AM455281	ProteinID:CAN70034	ProteinID:CAN70034.1	ProteinID:CCB62616	ProteinID:CCB62616.1	UniProt:F6I6P8
EMBL:FN596757	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0005977	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:Glyco_hydro_13_cat_dom	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF
InterPro:IPR013780	EntrezGene:LOC100261768	wikigene:LOC100261768	PFAM:PF00128	PANTHER:PTHR43002	PANTHER:PTHR43002:SF1
SMART:SM00642	SUPFAM:SSF51011	SUPFAM:SSF51445	TIGR:TC60541	TMHMM:TMhelix	UniParc:UPI000210AB98
ArrayExpress:VIT_11s0078g00310	EnsemblPlantsGene:VIT_11s0078g00310	EnsemblPlants:VIT_11s0078g00310.t01	RefSeq:XP_002265964	RefSeq:XP_002265964.2	SEG:seg

Description

No Description!

Coordinates

chr11:-:12508645..12542756

Molecular Weight (calculated)

61279.7 Da

IEP (calculated)

5.916

GRAVY (calculated)

-0.282

Length

539 amino acids

Sequence
(BLAST)

001: MVECFLSRIQ DKLILLIGWG RIEGGSIFVF SILFGTIRVN FWGYSTVNYF SPMIRYSSAG IHNCGHDAIN EVKLLIREAH KRGIEVLMDV VFNHTAEGNE
101: NGPILSFRGV DNSVYYMLAP KGEFYNYSGC GNTFNCNHPI VRQFILDCLR YWVTEMHVDG FRFDLASIMT RGSSLWDALN VYGNPAEGDS LTTGTPLSSP
201: PLIDMISNDP ILRGVKLIAE AWDAGGLYQV GMFPHWGLWS EWNGKYRDIV RQFIKGSDGF SGAFAECLCG SPNLYQEGGR KPWNSINFVC AHDGFTLADL
301: VTYNKKHNNA NGEDNNDGEN HNNSWNCGQE GEFASISVKK LRKRQMRNFF LCLMVSQGVP MIYMGDEYGH TKGGNNNTYC QDNYMNYFRW DKKEESLSDF
401: FRFCCLMSKF RQECESLGLN DFPTAERLQW HGRTPGMPDW SKTSRFVAFT MVDSVKGEIY VAFNTSHLPI IITLPERPGY RWQPLVDTSK PAPFDFLSND
501: VPERDTAVKQ YSQFTEANLY PMLSYSSIIL LLCPVDENA

Best Arabidopsis Sequence Match ( AT2G39930.1 )
(BLAST)

001: MDAIKCSSSF LHHTKLNTLF SNHTFPKISA PNFKPLFRPI SISAKDRRSN EAENIAVVEK PLKSDRFFIS DGLPSPFGPT VRDDGVNFSV YSTNSVSATI
101: CLISLSDLRQ NKVTEEIQLD PSRNRTGHVW HVFLRGDFKD MLYGYRFDGK FSPEEGHYYD SSNILLDPYA KAIISRDEFG VLGPDDNCWP QMACMVPTRE
201: EEFDWEGDMH LKLPQKDLVI YEMHVRGFTR HESSKIEFPG TYQGVAEKLD HLKELGINCI ELMPCHEFNE LEYYSYNTIL GDHRVNFWGY STIGFFSPMI
301: RYASASSNNF AGRAINEFKI LVKEAHKRGI EVIMDVVLNH TAEGNEKGPI FSFRGVDNSV YYMLAPKGEF YNYSGCGNTF NCNHPVVRQF ILDCLRYWVT
401: EMHVDGFRFD LGSIMSRSSS LWDAANVYGA DVEGDLLTTG TPISCPPVID MISNDPILRG VKLIAEAWDA GGLYQVGMFP HWGIWSEWNG KFRDVVRQFI
501: KGTDGFSGAF AECLCGSPNL YQGGRKPWHS INFICAHDGF TLADLVTYNN KNNLANGEEN NDGENHNYSW NCGEEGDFAS ISVKRLRKRQ MRNFFVSLMV
601: SQGVPMIYMG DEYGHTKGGN NNTYCHDNYM NYFRWDKKEE AHSDFFRFCR ILIKFRDECE SLGLNDFPTA KRLQWHGLAP EIPNWSETSR FVAFSLVDSV
701: KKEIYVAFNT SHLATLVSLP NRPGYRWEPF VDTSKPSPYD CITPDLPERE TAMKQYRHFL DANVYPMLSY SSIILLLSPI KDP

Arabidopsis Description

ISA1ISA1 [Source:UniProtKB/TrEMBL;Acc:A0A178VW25]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.