Factsheet for Zm00001d050532_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052844_P001	Maize	cytosol	23.4	55.56
Zm00001d024985_P004	Maize	plastid	17.73	32.0
PGSC0003DMT400053345	Potato	cytosol	15.02	21.03
Zm00001d016045_P001	Maize	plastid	16.75	18.43
VIT_11s0078g00310.t01	Wine grape	extracellular, golgi	18.47	13.91
Os08t0520900-00	Rice	cytosol, plastid	21.18	11.86
Zm00001d049753_P001	Maize	mitochondrion, plastid	23.65	11.51
GSMUA_Achr9P14020_001	Banana	plasma membrane, vacuole	19.7	11.46
TraesCS7A01G251400.1	Wheat	mitochondrion, plastid	22.17	11.39
TraesCS7D01G249500.1	Wheat	mitochondrion, plastid	22.17	11.38
TraesCS7B01G139700.2	Wheat	plastid	21.92	11.27
KRH41413	Soybean	plastid	20.2	10.28
Solyc07g014590.2.1	Tomato	extracellular	18.72	9.66
AT2G39930.1	Thale cress	plastid	17.24	8.94
CDX74820	Canola	plastid	17.24	8.89
CDY20500	Canola	plastid	17.0	8.8
Bra005001.1-P	Field mustard	plastid	17.0	8.54
Zm00001d050508_P001	Maize	cytosol	1.48	7.59
Zm00001d005948_P001	Maize	golgi, plasma membrane, plastid	7.14	6.94
Zm00001d020799_P003	Maize	mitochondrion	11.58	5.86
Zm00001d038121_P001	Maize	plastid	12.07	5.57
Zm00001d004438_P005	Maize	plastid	12.81	5.37
Zm00001d005949_P001	Maize	cytosol, mitochondrion, vacuole	2.22	3.23
VIT_11s0078g00380.t01	Wine grape	cytosol	1.97	2.59
HORVU7Hr1G051710.1	Barley	vacuole	2.96	2.38

Protein Annotations

MapMan:17.1.2.1.41	Gene3D:2.60.40.1180	Gene3D:3.20.20.80	Gene3D:3.30.720.90	UniProt:A0A1D6Q251	ProteinID:AQK52678.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780
InterPro:IPR038464	PFAM:PD010361	PFAM:PF01781	PANTHER:PTHR43002	PANTHER:PTHR43002:SF1	InterPro:Ribosomal_L38e
InterPro:Ribosomal_L38e_sf	SUPFAM:SSF51011	SUPFAM:SSF51445	SignalP:SignalP-noTM	UniParc:UPI0008434369	EnsemblPlantsGene:Zm00001d050532
EnsemblPlants:Zm00001d050532_P001	EnsemblPlants:Zm00001d050532_T001	SEG:seg	:	:	:

Description

Isoamylase 1 chloroplastic

Coordinates

chr4:-:97643888..97647942

Molecular Weight (calculated)

45695.2 Da

IEP (calculated)

8.636

GRAVY (calculated)

-0.241

Length

406 amino acids

Sequence
(BLAST)

001: MVLPCFLICL CCLLHVLHKI FVCPQSLYSN IDKCPKSLYA SKQTFGIVVH IGFNTTSVVP ERLVMIAGSW YKTIILVCGS SCLPGLPVGT LCGQVRKRYP
101: KGDAKEIKIH KIKDFLLTAR RNDAHFVKIK RSKDVVKFKV RPLQVQPVPP NSAPAFTHRN SDIGKRKLES PASGMATGEE HVAAPAVEDT LEKKQASTTE
201: LPAPSGWTKK GVPMFYMGDE YGHTKGGNNN TYCHDHYVNY FCWDKKEEQS SDLYRFCRLM TKFRKSCAVY VATVYSYSFG VQYTECESLG LEDFPTSERL
301: QWHGHQPGKP DWLEASRFVA FTMKDETKGE IYVAFNTSHL PVVVGLPERS GFRWEPVVDT GKEAPYDFLT DGPARSCCHR LPVLSFPQLQ SLSYAQLLLH
401: HPCIAP

Best Arabidopsis Sequence Match ( AT3G59540.1 )
(BLAST)

1: MPKQIHEIKD FLLTARRKDA RSVKIKRSKD IVKFKVRCSR YLYTLCVFDQ EKADKLKQSL PPGLSVQDL

Arabidopsis Description

RPL38A60S ribosomal protein L38 [Source:UniProtKB/Swiss-Prot;Acc:O22860]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.