Factsheet for PGSC0003DMT400053345

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400077770	Potato	cytosol	27.93	63.28
VIT_11s0078g00310.t01	Wine grape	extracellular, golgi	84.83	45.64
Solyc07g014590.2.1	Tomato	extracellular	97.59	35.96
Zm00001d052844_P001	Maize	cytosol	21.03	35.67
GSMUA_Achr9P14020_001	Banana	plasma membrane, vacuole	82.41	34.24
PGSC0003DMT400018766	Potato	cytosol	28.28	33.2
Os08t0520900-00	Rice	cytosol, plastid	77.24	30.9
CDX74820	Canola	plastid	80.34	29.61
CDY20500	Canola	plastid	80.0	29.59
KRH41413	Soybean	plastid	81.03	29.45
AT2G39930.1	Thale cress	plastid	79.31	29.37
Bra005001.1-P	Field mustard	plastid	80.0	28.71
KXG25605	Sorghum	plastid	76.9	28.16
TraesCS7A01G251400.1	Wheat	mitochondrion, plastid	75.17	27.59
TraesCS7D01G249500.1	Wheat	mitochondrion, plastid	74.83	27.43
TraesCS7B01G139700.2	Wheat	plastid	74.14	27.22
Zm00001d049753_P001	Maize	mitochondrion, plastid	76.55	26.62
Zm00001d050532_P001	Maize	extracellular	21.03	15.02
Zm00001d016045_P001	Maize	plastid	14.48	11.38
Zm00001d024985_P004	Maize	plastid	6.9	8.89
PGSC0003DMT400002502	Potato	plastid	26.9	8.88
PGSC0003DMT400018765	Potato	cytosol	4.83	6.11
VIT_11s0078g00380.t01	Wine grape	cytosol	0.0	0.0
HORVU7Hr1G051710.1	Barley	vacuole	0.0	0.0

Protein Annotations

Gene3D:2.60.40.1180	MapMan:3.2.2.6	MapMan:3.2.3.3.2.1	Gene3D:3.20.20.80	ProteinID:AAN15317	ProteinID:AAN15317.1
EMBL:AY132996	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	UniProt:M1BUT9
EnsemblPlantsGene:PGSC0003DMG400020699	PGSC:PGSC0003DMG400020699	EnsemblPlants:PGSC0003DMT400053345	PANTHER:PTHR43002	PANTHER:PTHR43002:SF1	SUPFAM:SSF51011
SUPFAM:SSF51445	UniParc:UPI000296C920	SEG:seg	:	:	:

Description

Isoamylase isoform 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400020699]

Coordinates

chr7:-:7890206..7894278

Molecular Weight (calculated)

33026.7 Da

IEP (calculated)

6.342

GRAVY (calculated)

-0.542

Length

290 amino acids

Sequence
(BLAST)

001: MVRQFIKGTD GFSGAFAECL CGSPNLYQKG GRKPWNSINF VCAHDGFTLA DLVTYNNKHN LANGEDNKDG ENHNNSWNCG EEGEFASIFV KKLRKRQMRN
101: FFLCLMVSQG VPMIYMGDEY GHTKGGNNNT YCHDNYINYF RWDKKDESSS DFLRFCGLMT KFRHECESLG LDGFPTAERL QWHGHTPRTP DWSEASRFVA
201: FTLVDKVKGE VYIAFNASHL PVTITLPERP GYRWQPLVDT GKPAPFDFLT DDVPERETAA KQYSHFLDAN QYPMLSYSSI ILLLSSADDA

Best Arabidopsis Sequence Match ( AT2G39930.1 )
(BLAST)

001: MDAIKCSSSF LHHTKLNTLF SNHTFPKISA PNFKPLFRPI SISAKDRRSN EAENIAVVEK PLKSDRFFIS DGLPSPFGPT VRDDGVNFSV YSTNSVSATI
101: CLISLSDLRQ NKVTEEIQLD PSRNRTGHVW HVFLRGDFKD MLYGYRFDGK FSPEEGHYYD SSNILLDPYA KAIISRDEFG VLGPDDNCWP QMACMVPTRE
201: EEFDWEGDMH LKLPQKDLVI YEMHVRGFTR HESSKIEFPG TYQGVAEKLD HLKELGINCI ELMPCHEFNE LEYYSYNTIL GDHRVNFWGY STIGFFSPMI
301: RYASASSNNF AGRAINEFKI LVKEAHKRGI EVIMDVVLNH TAEGNEKGPI FSFRGVDNSV YYMLAPKGEF YNYSGCGNTF NCNHPVVRQF ILDCLRYWVT
401: EMHVDGFRFD LGSIMSRSSS LWDAANVYGA DVEGDLLTTG TPISCPPVID MISNDPILRG VKLIAEAWDA GGLYQVGMFP HWGIWSEWNG KFRDVVRQFI
501: KGTDGFSGAF AECLCGSPNL YQGGRKPWHS INFICAHDGF TLADLVTYNN KNNLANGEEN NDGENHNYSW NCGEEGDFAS ISVKRLRKRQ MRNFFVSLMV
601: SQGVPMIYMG DEYGHTKGGN NNTYCHDNYM NYFRWDKKEE AHSDFFRFCR ILIKFRDECE SLGLNDFPTA KRLQWHGLAP EIPNWSETSR FVAFSLVDSV
701: KKEIYVAFNT SHLATLVSLP NRPGYRWEPF VDTSKPSPYD CITPDLPERE TAMKQYRHFL DANVYPMLSY SSIILLLSPI KDP

Arabidopsis Description

ISA1ISA1 [Source:UniProtKB/TrEMBL;Acc:A0A178VW25]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.