Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- plastid 1
- extracellular 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400053345 | Potato | cytosol | 63.28 | 27.93 |
| Zm00001d050508_P001 | Maize | cytosol | 17.19 | 27.85 |
| PGSC0003DMT400018765 | Potato | cytosol | 19.53 | 10.92 |
| PGSC0003DMT400018766 | Potato | cytosol | 20.31 | 10.53 |
| Solyc11g008040.1.1 | Tomato | mitochondrion | 4.69 | 4.92 |
| PGSC0003DMT400002502 | Potato | plastid | 28.12 | 4.1 |
| KRH62892 | Soybean | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400077770 | EnsemblPlantsGene:PGSC0003DMG400030253 | Gene3D:2.60.40.1180 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 |
| GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | InterPro:Glyco_hydro_b | InterPro:IPR013780 |
| PANTHER:PTHR43002 | PANTHER:PTHR43002:SF1 | PGSC:PGSC0003DMG400030253 | SEG:seg | SUPFAM:SSF51011 | UniParc:UPI000294D7BC |
| UniProt:M1CYW2 | MapMan:35.1 | : | : | : | : |
Description
Isoamylase isoform 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400030253]
Coordinates
chr10:+:38081131..38083206
Molecular Weight (calculated)
14546.3 Da
IEP (calculated)
4.801
GRAVY (calculated)
-0.286
Length
128 amino acids
Sequence
(BLAST)
(BLAST)
001: MISNDPILRG VKLIAEAWDC GGLYQVGMFQ HWGIWSEWNG KVDKVKGQLY IAFNANHLPV TITLPERPGY RWQPLVDTGK PAPFNYLTDD VPERETEAKQ
101: YSHFLDANQY PMLSYSSIIL LLSSADDA
101: YSHFLDANQY PMLSYSSIIL LLSSADDA
001: MDAIKCSSSF LHHTKLNTLF SNHTFPKISA PNFKPLFRPI SISAKDRRSN EAENIAVVEK PLKSDRFFIS DGLPSPFGPT VRDDGVNFSV YSTNSVSATI
101: CLISLSDLRQ NKVTEEIQLD PSRNRTGHVW HVFLRGDFKD MLYGYRFDGK FSPEEGHYYD SSNILLDPYA KAIISRDEFG VLGPDDNCWP QMACMVPTRE
201: EEFDWEGDMH LKLPQKDLVI YEMHVRGFTR HESSKIEFPG TYQGVAEKLD HLKELGINCI ELMPCHEFNE LEYYSYNTIL GDHRVNFWGY STIGFFSPMI
301: RYASASSNNF AGRAINEFKI LVKEAHKRGI EVIMDVVLNH TAEGNEKGPI FSFRGVDNSV YYMLAPKGEF YNYSGCGNTF NCNHPVVRQF ILDCLRYWVT
401: EMHVDGFRFD LGSIMSRSSS LWDAANVYGA DVEGDLLTTG TPISCPPVID MISNDPILRG VKLIAEAWDA GGLYQVGMFP HWGIWSEWNG KFRDVVRQFI
501: KGTDGFSGAF AECLCGSPNL YQGGRKPWHS INFICAHDGF TLADLVTYNN KNNLANGEEN NDGENHNYSW NCGEEGDFAS ISVKRLRKRQ MRNFFVSLMV
601: SQVKLTICCF FNFNSCSKLV SLMLCTLNYD TGVEGMSSKY KLISHKRI
101: CLISLSDLRQ NKVTEEIQLD PSRNRTGHVW HVFLRGDFKD MLYGYRFDGK FSPEEGHYYD SSNILLDPYA KAIISRDEFG VLGPDDNCWP QMACMVPTRE
201: EEFDWEGDMH LKLPQKDLVI YEMHVRGFTR HESSKIEFPG TYQGVAEKLD HLKELGINCI ELMPCHEFNE LEYYSYNTIL GDHRVNFWGY STIGFFSPMI
301: RYASASSNNF AGRAINEFKI LVKEAHKRGI EVIMDVVLNH TAEGNEKGPI FSFRGVDNSV YYMLAPKGEF YNYSGCGNTF NCNHPVVRQF ILDCLRYWVT
401: EMHVDGFRFD LGSIMSRSSS LWDAANVYGA DVEGDLLTTG TPISCPPVID MISNDPILRG VKLIAEAWDA GGLYQVGMFP HWGIWSEWNG KFRDVVRQFI
501: KGTDGFSGAF AECLCGSPNL YQGGRKPWHS INFICAHDGF TLADLVTYNN KNNLANGEEN NDGENHNYSW NCGEEGDFAS ISVKRLRKRQ MRNFFVSLMV
601: SQVKLTICCF FNFNSCSKLV SLMLCTLNYD TGVEGMSSKY KLISHKRI
Arabidopsis Description
ISA1ISA1 [Source:UniProtKB/TrEMBL;Acc:A0A178VW25]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.