Factsheet for PGSC0003DMT400002502

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g064800.1.1	Tomato	plastid	84.85	86.03
VIT_07s0104g00370.t01	Wine grape	plasma membrane, plastid, vacuole	56.49	56.24
Bra030528.1-P	Field mustard	cytosol	45.1	53.8
KRH67160	Soybean	plastid	52.62	53.35
CDY15458	Canola	cytosol	44.08	52.8
GSMUA_Achr6P16190_001	Banana	cytosol, plasma membrane, vacuole	45.22	52.51
KRG95479	Soybean	mitochondrion	51.71	52.49
GSMUA_Achr6P16200_001	Banana	cytosol, plasma membrane, vacuole	30.3	52.26
HORVU1Hr1G062690.3	Barley	cytosol	41.69	50.9
CDX89902	Canola	plastid	48.41	50.48
AT1G03310.2	Thale cress	plastid	49.77	49.55
Os05t0393700-01	Rice	cytosol, plastid	41.69	49.26
TraesCS1D01G246300.1	Wheat	plastid	43.96	48.92
TraesCS1B01G257700.1	Wheat	mitochondrion, plastid	43.74	48.73
TraesCS1A01G247100.1	Wheat	mitochondrion, plastid	43.96	48.68
Bra033388.1-P	Field mustard	plastid	46.81	48.47
CDY18165	Canola	plastid	44.76	48.04
OQU77947	Sorghum	plastid	43.51	47.75
CDX86680	Canola	plastid	44.99	47.71
Zm00001d038121_P001	Maize	plastid	43.05	43.0
PGSC0003DMT400018765	Potato	cytosol	8.77	33.62
PGSC0003DMT400077770	Potato	cytosol	4.1	28.12
PGSC0003DMT400053345	Potato	cytosol	8.88	26.9
PGSC0003DMT400018766	Potato	cytosol	6.95	24.7

Protein Annotations

EntrezGene:102577931	Gene3D:2.60.40.10	Gene3D:2.60.40.1180	MapMan:3.2.2.6	MapMan:3.2.3.3.2.1	Gene3D:3.20.20.80
ProteinID:AAN15318	ProteinID:AAN15318.1	EMBL:AY132997	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975
GO:GO:0005977	GO:GO:0005983	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0010021	GO:GO:0016787
GO:GO:0019156	GO:GO:0043033	InterPro:Glyco_hydro_13_N	InterPro:Glyco_hydro_13_cat_dom	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF
InterPro:IPR013780	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set	UniProt:M0ZK80	PFAM:PF00128
PFAM:PF02922	EnsemblPlantsGene:PGSC0003DMG400000954	PGSC:PGSC0003DMG400000954	EnsemblPlants:PGSC0003DMT400002502	PANTHER:PTHR43002	PANTHER:PTHR43002:SF2
SMART:SM00642	SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF81296	UniParc:UPI00029481E5	RefSeq:XP_006355876.1
RefSeq:XP_015168040.1	:	:	:	:	:

Description

Isoamylase isoform 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400000954]

Coordinates

chr9:-:46684825..46688571

Molecular Weight (calculated)

98003.5 Da

IEP (calculated)

7.220

GRAVY (calculated)

-0.188

Length

878 amino acids

Sequence
(BLAST)

001: MATSPIQLAV HSRLLSYGST ESTKLVPSSS GNRGKIVCSL RKLELEDMNF SGIGRNNDQE APRRAHRRKA LSASRISLVP SAKRVPTYLF RTDIGGQVKV
101: LVERTNGKYK VLVEVLPLEL SYAHSELVMV WGLFRSDASC FMPLDLNRRG ADGKSSTVET PFVQGPSGKV TVELDFEASL APFYISFYMK SQLVSDMENS
201: EIRSHRNTNF VVPVGLSSGH PAPLGISFQP DGSVNFALFS RSARSVVLCL YDDISVEKPS LEIDLDPYIN RSGDIWHAAL DCSLPFKTYG YRCKATTSGK
301: GELVLLDPYA KVIRRVIPRQ GGSEIRPKYL GELCLEPGYD WSGDVPPSLP MEKLIIYRLN VTQFTKDKSS KLPDDLAGTF SGISEKWHHF KDLGVNAMLL
401: EPIFPFDEQK GPYFPWHFFS PGNMYGPSGD PLSAIKSMKD MVKKLHANGI EVFLEVVFTH TAEDAPLMNV DNFSYCIKGG QYLNIQNALN CNYPIVQQMI
501: LDCLRHWVIE FHIDGFVFVN ASSLLRGFNG EILSRPPLVE AIAFDPILSK VKMIADNWNP LTNDSKENLF PHWRRWAEIN MRFCDDIRDF LRGEGLLSNL
601: ATRLCGSGDI FAGGRGPAFS FNYIARNSGL TLVDLVSFSS NEVASELSWN CGQEGATTNN IVLERRLKQV RNFLFILFIS LGVPVLNMGD ECGQSSGGSP
701: AYDARKSLGW NTLKTGFGTQ IAQFISFLSN LRMRRSDLLQ KRTFLKEENI QWHGSDQSPP KWDGPSSKFL AMTLKADAEV SQTLVSDIVG DLFVAFNGAG
801: DSEIVILPPP PTDMVWHRLV DTALPFPGFF DEKGTPVEDE LVAYEMKSHS CLLFEAQRLA EIDSSKRKKQ IRLSSKRQ

Best Arabidopsis Sequence Match ( AT1G03310.2 )
(BLAST)

001: MAAWSPSVGI GSCCLNNGIT RTWKFPSARL FTGRKNKIKL GSETLMFTRK RFMGDLVTSA LQSYQFSKIC ASKTSIELRE ALSSRRAEAD DLKKVTSYSF
101: RTKAGALVKV KVEKKREKYS ILVYVSSLEL SGDDKSRLVM VWGVYRSDSS CFLPLDFENS SQDSQTHTTE TTFVKSSLSE LMLGLEFDGK ESPFYLSFHL
201: KLVSGRDPDG QEMLTHRDTD FCIPVGFTAG HPLPLGLSSG PDDDSWNFSF FSRSSTNVVL CLYDDSTTDK PALELDLDPY VNRTGDVWHA SVDNTWDFVR
301: YGYRCKETAH SKEDVDVEGE PIVLDPYATV VGKSVSQKYL GSLSKSPSFD WGEDVSPNIP LEKLLVYRLN VKGFTQHRSS KLPSNVAGTF SGVAEKVSHL
401: KTLGTNAVLL EPIFSFSEQK GPYFPFHFFS PMDIYGPSNS LESAVNSMKV MVKKLHSEGI EVLLEVVFTH TADSGALRGI DDSSYYYKGR ANDLDSKSYL
501: NCNYPVVQQL VLESLRYWVT EFHVDGFCFI NASSLLRGVH GEQLSRPPLV EAIAFDPLLA ETKLIADCWD PLEMMPKEVR FPHWKRWAEL NTRYCRNVRN
601: FLRGRGVLSD LATRICGSGD VFTDGRGPAF SFNYISRNSG LSLVDIVSFS GPELASELSW NCGEEGATNK SAVLQRRLKQ IRNFLFIQYI SLGVPVLNMG
701: DECGISTRGS PLLESRKPFD WNLLASAFGT QITQFISFMT SVRARRSDVF QRRDFLKPEN IVWYANDQTT PKWEDPASKF LALEIKSESE EEETASLAEP
801: NEPKSNDLFI GFNASDHPES VVLPSLPDGS KWRRLVDTAL PFPGFFSVEG ETVVAEEPLQ QLVVYEMKPY SCTLFETINT TA

Arabidopsis Description

ISA2ISA2 [Source:UniProtKB/TrEMBL;Acc:A0A178WGA8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.