Factsheet for GSMUA_Achr6P16190_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole, cytosol

Predictor Summary:

nucleus 1
vacuole 1
plastid 1
mitochondrion 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P16200_001	Banana	cytosol, plasma membrane, vacuole	54.76	81.34
HORVU1Hr1G062690.3	Barley	cytosol	50.4	52.99
Bra030528.1-P	Field mustard	cytosol	49.87	51.22
Os05t0393700-01	Rice	cytosol, plastid	50.13	51.01
TraesCS1A01G247100.1	Wheat	mitochondrion, plastid	53.04	50.57
CDY15458	Canola	cytosol	48.81	50.34
TraesCS1D01G246300.1	Wheat	plastid	51.98	49.81
TraesCS1B01G257700.1	Wheat	mitochondrion, plastid	51.85	49.75
OQU77947	Sorghum	plastid	51.45	48.62
VIT_07s0104g00370.t01	Wine grape	plasma membrane, plastid, vacuole	54.63	46.83
KRH67160	Soybean	plastid	53.17	46.42
KRG95479	Soybean	mitochondrion	52.38	45.78
PGSC0003DMT400002502	Potato	plastid	52.51	45.22
Solyc09g064800.1.1	Tomato	plastid	51.32	44.8
CDX89902	Canola	plastid	48.94	43.94
CDY18165	Canola	plastid	47.49	43.89
CDX86680	Canola	plastid	48.02	43.84
AT1G03310.2	Thale cress	plastid	51.06	43.76
Zm00001d038121_P001	Maize	plastid	50.66	43.57
Bra033388.1-P	Field mustard	plastid	48.02	42.81
GSMUA_Achr9P14980_001	Banana	cytosol	29.23	30.91
GSMUA_Achr9P14010_001	Banana	plastid	7.8	26.11
GSMUA_Achr9P14020_001	Banana	plasma membrane, vacuole	22.35	24.21

Protein Annotations

Gene3D:2.60.40.10	Gene3D:2.60.40.1180	MapMan:3.2.2.6	MapMan:3.2.3.3.2.1	Gene3D:3.20.20.80	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
EnsemblPlantsGene:GSMUA_Achr6G16190_001	EnsemblPlants:GSMUA_Achr6P16190_001	EnsemblPlants:GSMUA_Achr6T16190_001	InterPro:Glyco_hydro_13_N	InterPro:Glyco_hydro_13_cat_dom	InterPro:Glyco_hydro_b
InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set	UniProt:M0T7G7
PFAM:PF00128	PFAM:PF02922	PANTHER:PTHR43002	PANTHER:PTHR43002:SF2	SUPFAM:SSF51011	SUPFAM:SSF51445
SUPFAM:SSF81296	UniParc:UPI0002965456	SEG:seg	:	:	:

Description

Isoamylase 2, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr6G16190_001]

Coordinates

chr6:+:10787780..10790366

Molecular Weight (calculated)

83744.9 Da

IEP (calculated)

4.825

GRAVY (calculated)

-0.076

Length

756 amino acids

Sequence
(BLAST)

001: MAVASGKAQV LEGREFPYMF RSEKGDLVKV VVVGAVGVNF SVHIEVLSVS QDELVLIYEM SRSDPPGSLV ADIEKGIGAV IMPFVRNSSG RYTLDLDFDS
101: AKAPFYLSFM LHLCSDAGVV ASEIKTHRKT RFCVPVGLGP GYPAPLGASV SDDGMVNFSL FSRKAENVVL CLYEGKTEVP SLEIELDPYV NRTGDIWHVS
201: MESIEDYVSY GYRCKGPVEK RGGFDMQHVL LDPYAKMVRN LLSVQGDTMT PTKCLGSLEM EPIFDWSGDV HPQLPTEKLV VYRLNVGQFT IDNSSGLPED
301: VAGTFGGVSE KVEHFKELGV NAILLEPIFP FDVNKGPYFP YHFFSVMDEY GQEHNAASAI NSMKEMIKTL HSEGIENVGS GTNSLLKCNN PIVQQLIIDS
401: LRHWVVEFHV DGFCFINSSS MARGQNGDHL SRPPLVEAIA FDPVLSRTKI VADCWSPLDM SYMEIQFPHW KAWAEMNMRF CSDVRNFLRG EGLLSNLATR
501: LCGSGDLFSS RGPAFSFNFV TKNVGLPLVD LVSFSTAELA SELSWNCGDE GPTNNNTVLE TRLKQIRNFL FVLFVSLGVP VLNMGDECGY STGGSPLYDD
601: RKPINWDSLG TGFSKQITKF IAYLGSLRIR RGDIFQSKHF LKVENIVWFG SNQSEPKWDD PTCKFLALAL KSEKNFDMSN SNCGDLFICF NASNNLETVV
701: LPEQPEGNVW LRLVDTSLAF PGIFSNSCDP NVQKAEGSSS YELKPHSCAL FEATVD

Best Arabidopsis Sequence Match ( AT1G03310.2 )
(BLAST)

001: MAAWSPSVGI GSCCLNNGIT RTWKFPSARL FTGRKNKIKL GSETLMFTRK RFMGDLVTSA LQSYQFSKIC ASKTSIELRE ALSSRRAEAD DLKKVTSYSF
101: RTKAGALVKV KVEKKREKYS ILVYVSSLEL SGDDKSRLVM VWGVYRSDSS CFLPLDFENS SQDSQTHTTE TTFVKSSLSE LMLGLEFDGK ESPFYLSFHL
201: KLVSGRDPDG QEMLTHRDTD FCIPVGFTAG HPLPLGLSSG PDDDSWNFSF FSRSSTNVVL CLYDDSTTDK PALELDLDPY VNRTGDVWHA SVDNTWDFVR
301: YGYRCKETAH SKEDVDVEGE PIVLDPYATV VGKSVSQKYL GSLSKSPSFD WGEDVSPNIP LEKLLVYRLN VKGFTQHRSS KLPSNVAGTF SGVAEKVSHL
401: KTLGTNAVLL EPIFSFSEQK GPYFPFHFFS PMDIYGPSNS LESAVNSMKV MVKKLHSEGI EVLLEVVFTH TADSGALRGI DDSSYYYKGR ANDLDSKSYL
501: NCNYPVVQQL VLESLRYWVT EFHVDGFCFI NASSLLRGVH GEQLSRPPLV EAIAFDPLLA ETKLIADCWD PLEMMPKEVR FPHWKRWAEL NTRYCRNVRN
601: FLRGRGVLSD LATRICGSGD VFTDGRGPAF SFNYISRNSG LSLVDIVSFS GPELASELSW NCGEEGATNK SAVLQRRLKQ IRNFLFIQYI SLGVPVLNMG
701: DECGISTRGS PLLESRKPFD WNLLASAFGT QITQFISFMT SVRARRSDVF QRRDFLKPEN IVWYANDQTT PKWEDPASKF LALEIKSESE EEETASLAEP
801: NEPKSNDLFI GFNASDHPES VVLPSLPDGS KWRRLVDTAL PFPGFFSVEG ETVVAEEPLQ QLVVYEMKPY SCTLFETINT TA

Arabidopsis Description

ISA2ISA2 [Source:UniProtKB/TrEMBL;Acc:A0A178WGA8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.