Factsheet for VIT_11s0078g00380.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 2
vacuole 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G051710.1	Barley	vacuole	44.34	27.18
KRH41413	Soybean	plastid	54.05	20.93
Solyc07g014590.2.1	Tomato	extracellular	51.46	20.2
CDX74820	Canola	plastid	50.49	19.82
CDY20500	Canola	plastid	49.51	19.52
Bra005001.1-P	Field mustard	plastid	50.16	19.18
Os08t0520900-00	Rice	cytosol, plastid	44.01	18.76
AT2G39930.1	Thale cress	plastid	46.93	18.52
TraesCS7B01G139700.2	Wheat	plastid	46.28	18.1
TraesCS7D01G249500.1	Wheat	mitochondrion, plastid	46.28	18.08
TraesCS7A01G251400.1	Wheat	mitochondrion, plastid	45.31	17.72
KXG25605	Sorghum	plastid	42.07	16.41
Zm00001d049753_P001	Maize	mitochondrion, plastid	41.75	15.47
VIT_18s0001g06520.t01	Wine grape	plastid	26.54	10.58
GSMUA_Achr9P14020_001	Banana	plasma membrane, vacuole	23.62	10.46
VIT_07s0104g00370.t01	Wine grape	plasma membrane, plastid, vacuole	22.98	8.05
Zm00001d024985_P004	Maize	plastid	2.91	4.0
VIT_13s0019g05160.t01	Wine grape	plastid	7.77	2.51
Zm00001d050532_P001	Maize	extracellular	2.59	1.97
VIT_11s0078g00310.t01	Wine grape	extracellular, golgi	3.24	1.86
Zm00001d016045_P001	Maize	plastid	1.94	1.63
Zm00001d052844_P001	Maize	cytosol	0.65	1.17
PGSC0003DMT400053345	Potato	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.60.40.10	Gene3D:3.20.20.80	MapMan:35.1	EMBL:AM476944	ProteinID:CAN77424	ProteinID:CAN77424.1
ProteinID:CCB62617	ProteinID:CCB62617.1	UniProt:F6I6P9	EMBL:FN596757	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_13_N
InterPro:Glycoside_hydrolase_SF	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set	PFAM:PF02922	PANTHER:PTHR43002
PANTHER:PTHR43002:SF1	SUPFAM:SSF51445	SUPFAM:SSF81296	UniParc:UPI000210AB99	ArrayExpress:VIT_11s0078g00380	EnsemblPlantsGene:VIT_11s0078g00380
EnsemblPlants:VIT_11s0078g00380.t01	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:-:12588715..12602202

Molecular Weight (calculated)

34750.3 Da

IEP (calculated)

5.364

GRAVY (calculated)

-0.278

Length

309 amino acids

Sequence
(BLAST)

001: MLMHEIFKSL MELTHYASCS SHYLPKLLSP HKPPQWWNPT PRGKSSNNWS AKPSNMRFSK WVVAAVGSGA EAETVVVEKP KLQPFLVFEG CPAPLGATAR
101: DGGVNFAVYS GNAVSATLCL ISASDLEEDR VTEQISLDPL TNKTGDVWHV FLKGNFENIV YGYKFDGKFS PEEGHYYDSS RLLLDPYAKA VISRGEFGIL
201: GPEGNCWPLM AGMIPSSDAE FDWEGDLPLK YPQKDLIIYE MHVRGFTRHE SSRTKFPGTY HGVVEKLDHL KELGVNCIEL MPCHEFNELE YFSYNSVLDD
301: YSLQFAITM

Best Arabidopsis Sequence Match ( AT2G39930.3 )
(BLAST)

001: MDAIKCSSSF LHHTKLNTLF SNHTFPKISA PNFKPLFRPI SISAKDRRSN EAENIAVVEK PLKSDRFFIS DGLPSPFGPT VRDDGVNFSV YSTNSVSATI
101: CLISLSDLRQ NKVTEEIQLD PSRNRTGHVW HVFLRGDFKD MLYGYRFDGK FSPEEGHYYD SSNILLDPYA KAIISRDEFG VLGPDDNCWP QMACMVPTRE
201: EEFDWEGDMH LKLPQKDLVI YEMHVRGFTR HESSKIEFPG TYQGVAEKLD HLKELGINCI ELMPCHEFNE LEYYSYNTIL GDHRVNFWGY STIGFFSPMI
301: RYASASSNNF AGRAINEFKI LVKEAHKRGI EVIMDVVLNH TAEGNEKGPI FSFRGVDNSV YYMLAPKGEF YNYSGCGNTF NCNHPVVRQF ILDCLRYWVT
401: EMHVDGFRFD LGSIMSRSSS LWDAANVYGA DVEGDLLTTG TPISCPPVID MISNDPILRG VKLIAEAWDA GGLYQVGMFP HWGIWSEWNG KFRDVVRQFI
501: KGTDGFSGAF AECLCGSPNL YQGGRKPWHS INFICAHDGF TLADLVTYNN KNNLANGEEN NDGENHNYSW NCGEEGDFAS ISVKRLRKRQ MRNFFVSLMV
601: SQVKLTICCF FNFNSCSKLV SLMLCTLNYD TGVEGMSSKY KLISHKRI

Arabidopsis Description

ISA1ISA1 [Source:UniProtKB/TrEMBL;Acc:A0A178VW25]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.