Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 7
- cytosol 2
- nucleus 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
extracellular:
29876421
|
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400053345 | Potato | cytosol | 35.96 | 97.59 |
VIT_11s0078g00310.t01 | Wine grape | extracellular, golgi | 55.4 | 80.89 |
CDY20500 | Canola | plastid | 71.41 | 71.68 |
CDX74820 | Canola | plastid | 71.66 | 71.66 |
Os08t0520900-00 | Rice | cytosol, plastid | 65.95 | 71.59 |
AT2G39930.1 | Thale cress | plastid | 70.14 | 70.5 |
Bra005001.1-P | Field mustard | plastid | 71.41 | 69.55 |
KRH41413 | Soybean | plastid | 70.52 | 69.55 |
GSMUA_Achr9P14020_001 | Banana | plasma membrane, vacuole | 60.23 | 67.91 |
TraesCS7A01G251400.1 | Wheat | mitochondrion, plastid | 66.96 | 66.71 |
TraesCS7B01G139700.2 | Wheat | plastid | 66.84 | 66.58 |
TraesCS7D01G249500.1 | Wheat | mitochondrion, plastid | 66.84 | 66.5 |
KXG25605 | Sorghum | plastid | 65.95 | 65.53 |
HORVU7Hr1G051710.1 | Barley | vacuole | 38.5 | 60.12 |
Zm00001d049753_P001 | Maize | mitochondrion, plastid | 58.83 | 55.52 |
VIT_11s0078g00380.t01 | Wine grape | cytosol | 20.2 | 51.46 |
Solyc06g009220.2.1 | Tomato | plastid | 40.53 | 43.17 |
Zm00001d052844_P001 | Maize | cytosol | 8.26 | 38.01 |
Solyc09g064800.1.1 | Tomato | plastid | 27.83 | 25.29 |
Zm00001d050532_P001 | Maize | extracellular | 9.66 | 18.72 |
Solyc11g008050.1.1 | Tomato | cytosol | 9.91 | 17.07 |
Zm00001d016045_P001 | Maize | plastid | 7.75 | 16.53 |
Zm00001d024985_P004 | Maize | plastid | 4.32 | 15.11 |
Solyc11g008060.1.1 | Tomato | plastid | 4.57 | 11.76 |
Solyc11g008040.1.1 | Tomato | mitochondrion | 1.14 | 7.38 |
Protein Annotations
Gene3D:2.60.40.10 | Gene3D:2.60.40.1180 | MapMan:3.2.2.6 | MapMan:3.2.3.3.2.1 | Gene3D:3.20.20.80 | GO:GO:0003674 |
GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
GO:GO:0005975 | GO:GO:0005977 | GO:GO:0005983 | GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 | GO:GO:0010021 |
GO:GO:0010368 | GO:GO:0016787 | GO:GO:0019156 | GO:GO:0043033 | InterPro:Glyco_hydro_13_N | InterPro:Glyco_hydro_13_cat_dom |
InterPro:Glyco_hydro_b | InterPro:Glycoside_hydrolase_SF | InterPro:IPR013780 | InterPro:IPR013783 | InterPro:Ig-like_fold | InterPro:Ig_E-set |
UniProt:K4CC79 | PFAM:PF00128 | PFAM:PF02922 | PANTHER:PTHR43002 | PANTHER:PTHR43002:SF1 | SMART:SM00642 |
SUPFAM:SSF51011 | SUPFAM:SSF51445 | SUPFAM:SSF81296 | EnsemblPlantsGene:Solyc07g014590.2 | EnsemblPlants:Solyc07g014590.2.1 | UniParc:UPI000276BBCF |
SEG:seg | : | : | : | : | : |
Description
Isoamylase 1, chloroplastic [Source:Projected from Arabidopsis thaliana (AT2G39930) UniProtKB/Swiss-Prot;Acc:O04196]
Coordinates
chr7:-:4925611..4940909
Molecular Weight (calculated)
88905.8 Da
IEP (calculated)
5.766
GRAVY (calculated)
-0.338
Length
787 amino acids
Sequence
(BLAST)
(BLAST)
001: MELLHSPSIS TYKPKLNYQN HLFSRRNSKP VDFETIRRKS VVNAAVHRLA AKTAASAVVV EKSTTERCRF EVLSGKPLPF GATATDGGVN FAVFSRNATA
101: ATLCLITLSD LPEKRVTEQI FLDPLANKTG DVWHVFLKGD FENMLYGYKF DGKFCPEEGH YFDSSQIVLD PYAKAIVSRG EYGVLGPEDD CWPPMAGMVP
201: SASDQFDWEG DLPLKFSQRN LVIYEMHVRG FTNHESSETK YPGTYLGVVE KLDHLKELGV NCIELMPCHE FNELEYYSYN SVLGDYKFNF WGYSTVNFFS
301: PMGRYSSAGL SNCGLGAINE FKYLVKEAHK RGIEVIMDVV FNHTAEGNEN GPILSFRGID NSVFYTLAPK GEFYNYSGCG NTFNCNNPIV RQFIVDCLRY
401: WVTEMHVDGF RFDLASILTR SSSSWNAVNV YGNSIDGDVI TTGTPLTSPP LIDMISNDPI LRGVKLIAEA WDCGGLYQVG MFPHWGIWSE WNGKYRDMVR
501: QFIKGTDGFS GAFAECLCGS PNLYQKGGRK PWNSINFVCA HDGFTLADLV TYNNKHNLAN GEDNKDGENH NNSWNCGEEG EFASIFVKKL RKRQMRNFFL
601: CLMVSQGVPM IYMGDEYGHT KGGNNNTYCH DNYINYFRWD KKDESSSDFL RFCSLMTNFR HECESLGLDG FPTAERLQWH GHTPRTPDWS ETSRFVAFTL
701: VDKVKGELYI AFNASHLPVT ITLPERPGYL WQPLVDTGKP APFDFLTDDV PERDTAAKQY SHFLDANQYP MLSYSSIILL LSSADDA
101: ATLCLITLSD LPEKRVTEQI FLDPLANKTG DVWHVFLKGD FENMLYGYKF DGKFCPEEGH YFDSSQIVLD PYAKAIVSRG EYGVLGPEDD CWPPMAGMVP
201: SASDQFDWEG DLPLKFSQRN LVIYEMHVRG FTNHESSETK YPGTYLGVVE KLDHLKELGV NCIELMPCHE FNELEYYSYN SVLGDYKFNF WGYSTVNFFS
301: PMGRYSSAGL SNCGLGAINE FKYLVKEAHK RGIEVIMDVV FNHTAEGNEN GPILSFRGID NSVFYTLAPK GEFYNYSGCG NTFNCNNPIV RQFIVDCLRY
401: WVTEMHVDGF RFDLASILTR SSSSWNAVNV YGNSIDGDVI TTGTPLTSPP LIDMISNDPI LRGVKLIAEA WDCGGLYQVG MFPHWGIWSE WNGKYRDMVR
501: QFIKGTDGFS GAFAECLCGS PNLYQKGGRK PWNSINFVCA HDGFTLADLV TYNNKHNLAN GEDNKDGENH NNSWNCGEEG EFASIFVKKL RKRQMRNFFL
601: CLMVSQGVPM IYMGDEYGHT KGGNNNTYCH DNYINYFRWD KKDESSSDFL RFCSLMTNFR HECESLGLDG FPTAERLQWH GHTPRTPDWS ETSRFVAFTL
701: VDKVKGELYI AFNASHLPVT ITLPERPGYL WQPLVDTGKP APFDFLTDDV PERDTAAKQY SHFLDANQYP MLSYSSIILL LSSADDA
001: MDAIKCSSSF LHHTKLNTLF SNHTFPKISA PNFKPLFRPI SISAKDRRSN EAENIAVVEK PLKSDRFFIS DGLPSPFGPT VRDDGVNFSV YSTNSVSATI
101: CLISLSDLRQ NKVTEEIQLD PSRNRTGHVW HVFLRGDFKD MLYGYRFDGK FSPEEGHYYD SSNILLDPYA KAIISRDEFG VLGPDDNCWP QMACMVPTRE
201: EEFDWEGDMH LKLPQKDLVI YEMHVRGFTR HESSKIEFPG TYQGVAEKLD HLKELGINCI ELMPCHEFNE LEYYSYNTIL GDHRVNFWGY STIGFFSPMI
301: RYASASSNNF AGRAINEFKI LVKEAHKRGI EVIMDVVLNH TAEGNEKGPI FSFRGVDNSV YYMLAPKGEF YNYSGCGNTF NCNHPVVRQF ILDCLRYWVT
401: EMHVDGFRFD LGSIMSRSSS LWDAANVYGA DVEGDLLTTG TPISCPPVID MISNDPILRG VKLIAEAWDA GGLYQVGMFP HWGIWSEWNG KFRDVVRQFI
501: KGTDGFSGAF AECLCGSPNL YQGGRKPWHS INFICAHDGF TLADLVTYNN KNNLANGEEN NDGENHNYSW NCGEEGDFAS ISVKRLRKRQ MRNFFVSLMV
601: SQGVPMIYMG DEYGHTKGGN NNTYCHDNYM NYFRWDKKEE AHSDFFRFCR ILIKFRDECE SLGLNDFPTA KRLQWHGLAP EIPNWSETSR FVAFSLVDSV
701: KKEIYVAFNT SHLATLVSLP NRPGYRWEPF VDTSKPSPYD CITPDLPERE TAMKQYRHFL DANVYPMLSY SSIILLLSPI KDP
101: CLISLSDLRQ NKVTEEIQLD PSRNRTGHVW HVFLRGDFKD MLYGYRFDGK FSPEEGHYYD SSNILLDPYA KAIISRDEFG VLGPDDNCWP QMACMVPTRE
201: EEFDWEGDMH LKLPQKDLVI YEMHVRGFTR HESSKIEFPG TYQGVAEKLD HLKELGINCI ELMPCHEFNE LEYYSYNTIL GDHRVNFWGY STIGFFSPMI
301: RYASASSNNF AGRAINEFKI LVKEAHKRGI EVIMDVVLNH TAEGNEKGPI FSFRGVDNSV YYMLAPKGEF YNYSGCGNTF NCNHPVVRQF ILDCLRYWVT
401: EMHVDGFRFD LGSIMSRSSS LWDAANVYGA DVEGDLLTTG TPISCPPVID MISNDPILRG VKLIAEAWDA GGLYQVGMFP HWGIWSEWNG KFRDVVRQFI
501: KGTDGFSGAF AECLCGSPNL YQGGRKPWHS INFICAHDGF TLADLVTYNN KNNLANGEEN NDGENHNYSW NCGEEGDFAS ISVKRLRKRQ MRNFFVSLMV
601: SQGVPMIYMG DEYGHTKGGN NNTYCHDNYM NYFRWDKKEE AHSDFFRFCR ILIKFRDECE SLGLNDFPTA KRLQWHGLAP EIPNWSETSR FVAFSLVDSV
701: KKEIYVAFNT SHLATLVSLP NRPGYRWEPF VDTSKPSPYD CITPDLPERE TAMKQYRHFL DANVYPMLSY SSIILLLSPI KDP
Arabidopsis Description
ISA1ISA1 [Source:UniProtKB/TrEMBL;Acc:A0A178VW25]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.