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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • plastid 7
  • cytosol 2
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:cytosol
extracellular: 29876421
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400053345 Potato cytosol 35.96 97.59
VIT_11s0078g00310.t01 Wine grape extracellular, golgi 55.4 80.89
CDY20500 Canola plastid 71.41 71.68
CDX74820 Canola plastid 71.66 71.66
Os08t0520900-00 Rice cytosol, plastid 65.95 71.59
AT2G39930.1 Thale cress plastid 70.14 70.5
Bra005001.1-P Field mustard plastid 71.41 69.55
KRH41413 Soybean plastid 70.52 69.55
GSMUA_Achr9P14020_001 Banana plasma membrane, vacuole 60.23 67.91
TraesCS7A01G251400.1 Wheat mitochondrion, plastid 66.96 66.71
TraesCS7B01G139700.2 Wheat plastid 66.84 66.58
TraesCS7D01G249500.1 Wheat mitochondrion, plastid 66.84 66.5
KXG25605 Sorghum plastid 65.95 65.53
HORVU7Hr1G051710.1 Barley vacuole 38.5 60.12
Zm00001d049753_P001 Maize mitochondrion, plastid 58.83 55.52
VIT_11s0078g00380.t01 Wine grape cytosol 20.2 51.46
Solyc06g009220.2.1 Tomato plastid 40.53 43.17
Zm00001d052844_P001 Maize cytosol 8.26 38.01
Solyc09g064800.1.1 Tomato plastid 27.83 25.29
Zm00001d050532_P001 Maize extracellular 9.66 18.72
Solyc11g008050.1.1 Tomato cytosol 9.91 17.07
Zm00001d016045_P001 Maize plastid 7.75 16.53
Zm00001d024985_P004 Maize plastid 4.32 15.11
Solyc11g008060.1.1 Tomato plastid 4.57 11.76
Solyc11g008040.1.1 Tomato mitochondrion 1.14 7.38
Protein Annotations
Gene3D:2.60.40.10Gene3D:2.60.40.1180MapMan:3.2.2.6MapMan:3.2.3.3.2.1Gene3D:3.20.20.80GO:GO:0003674
GO:GO:0003824GO:GO:0004553GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005975GO:GO:0005977GO:GO:0005983GO:GO:0006091GO:GO:0008150GO:GO:0008152
GO:GO:0009056GO:GO:0009058GO:GO:0009507GO:GO:0009536GO:GO:0009987GO:GO:0010021
GO:GO:0010368GO:GO:0016787GO:GO:0019156GO:GO:0043033InterPro:Glyco_hydro_13_NInterPro:Glyco_hydro_13_cat_dom
InterPro:Glyco_hydro_bInterPro:Glycoside_hydrolase_SFInterPro:IPR013780InterPro:IPR013783InterPro:Ig-like_foldInterPro:Ig_E-set
UniProt:K4CC79PFAM:PF00128PFAM:PF02922PANTHER:PTHR43002PANTHER:PTHR43002:SF1SMART:SM00642
SUPFAM:SSF51011SUPFAM:SSF51445SUPFAM:SSF81296EnsemblPlantsGene:Solyc07g014590.2EnsemblPlants:Solyc07g014590.2.1UniParc:UPI000276BBCF
SEG:seg:::::
Description
Isoamylase 1, chloroplastic [Source:Projected from Arabidopsis thaliana (AT2G39930) UniProtKB/Swiss-Prot;Acc:O04196]
Coordinates
chr7:-:4925611..4940909
Molecular Weight (calculated)
88905.8 Da
IEP (calculated)
5.766
GRAVY (calculated)
-0.338
Length
787 amino acids
Sequence
(BLAST)
001: MELLHSPSIS TYKPKLNYQN HLFSRRNSKP VDFETIRRKS VVNAAVHRLA AKTAASAVVV EKSTTERCRF EVLSGKPLPF GATATDGGVN FAVFSRNATA
101: ATLCLITLSD LPEKRVTEQI FLDPLANKTG DVWHVFLKGD FENMLYGYKF DGKFCPEEGH YFDSSQIVLD PYAKAIVSRG EYGVLGPEDD CWPPMAGMVP
201: SASDQFDWEG DLPLKFSQRN LVIYEMHVRG FTNHESSETK YPGTYLGVVE KLDHLKELGV NCIELMPCHE FNELEYYSYN SVLGDYKFNF WGYSTVNFFS
301: PMGRYSSAGL SNCGLGAINE FKYLVKEAHK RGIEVIMDVV FNHTAEGNEN GPILSFRGID NSVFYTLAPK GEFYNYSGCG NTFNCNNPIV RQFIVDCLRY
401: WVTEMHVDGF RFDLASILTR SSSSWNAVNV YGNSIDGDVI TTGTPLTSPP LIDMISNDPI LRGVKLIAEA WDCGGLYQVG MFPHWGIWSE WNGKYRDMVR
501: QFIKGTDGFS GAFAECLCGS PNLYQKGGRK PWNSINFVCA HDGFTLADLV TYNNKHNLAN GEDNKDGENH NNSWNCGEEG EFASIFVKKL RKRQMRNFFL
601: CLMVSQGVPM IYMGDEYGHT KGGNNNTYCH DNYINYFRWD KKDESSSDFL RFCSLMTNFR HECESLGLDG FPTAERLQWH GHTPRTPDWS ETSRFVAFTL
701: VDKVKGELYI AFNASHLPVT ITLPERPGYL WQPLVDTGKP APFDFLTDDV PERDTAAKQY SHFLDANQYP MLSYSSIILL LSSADDA
Best Arabidopsis Sequence Match ( AT2G39930.1 )
(BLAST)
001: MDAIKCSSSF LHHTKLNTLF SNHTFPKISA PNFKPLFRPI SISAKDRRSN EAENIAVVEK PLKSDRFFIS DGLPSPFGPT VRDDGVNFSV YSTNSVSATI
101: CLISLSDLRQ NKVTEEIQLD PSRNRTGHVW HVFLRGDFKD MLYGYRFDGK FSPEEGHYYD SSNILLDPYA KAIISRDEFG VLGPDDNCWP QMACMVPTRE
201: EEFDWEGDMH LKLPQKDLVI YEMHVRGFTR HESSKIEFPG TYQGVAEKLD HLKELGINCI ELMPCHEFNE LEYYSYNTIL GDHRVNFWGY STIGFFSPMI
301: RYASASSNNF AGRAINEFKI LVKEAHKRGI EVIMDVVLNH TAEGNEKGPI FSFRGVDNSV YYMLAPKGEF YNYSGCGNTF NCNHPVVRQF ILDCLRYWVT
401: EMHVDGFRFD LGSIMSRSSS LWDAANVYGA DVEGDLLTTG TPISCPPVID MISNDPILRG VKLIAEAWDA GGLYQVGMFP HWGIWSEWNG KFRDVVRQFI
501: KGTDGFSGAF AECLCGSPNL YQGGRKPWHS INFICAHDGF TLADLVTYNN KNNLANGEEN NDGENHNYSW NCGEEGDFAS ISVKRLRKRQ MRNFFVSLMV
601: SQGVPMIYMG DEYGHTKGGN NNTYCHDNYM NYFRWDKKEE AHSDFFRFCR ILIKFRDECE SLGLNDFPTA KRLQWHGLAP EIPNWSETSR FVAFSLVDSV
701: KKEIYVAFNT SHLATLVSLP NRPGYRWEPF VDTSKPSPYD CITPDLPERE TAMKQYRHFL DANVYPMLSY SSIILLLSPI KDP
Arabidopsis Description
ISA1ISA1 [Source:UniProtKB/TrEMBL;Acc:A0A178VW25]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.