Factsheet for VIT_13s0019g05160.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
vacuole 1
extracellular 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g008050.1.1	Tomato	cytosol	35.25	73.74
KRH34652	Soybean	plastid	71.23	71.61
Os04t0164900-01	Rice	cytosol, nucleus, plastid	39.33	67.75
AT5G04360.2	Thale cress	plastid	67.15	66.53
CDX70233	Canola	plastid	65.9	65.42
CDY51316	Canola	plastid	65.38	64.43
HORVU7Hr1G027860.4	Barley	cytosol, vacuole	57.95	60.81
KXG25811	Sorghum	plastid	59.2	58.71
TraesCS7B01G034600.1	Wheat	plastid	58.05	58.12
TraesCS7D01G133100.1	Wheat	golgi	58.05	57.63
TraesCS7A01G133500.2	Wheat	golgi	57.85	57.42
Zm00001d004438_P005	Maize	plastid	55.65	54.9
Bra009461.1-P	Field mustard	plastid	64.96	46.55
CDY47998	Canola	cytosol	29.18	42.92
Bra040385.1-P	Field mustard	cytosol, plasma membrane, plastid	29.92	38.13
VIT_11s0078g00310.t01	Wine grape	extracellular, golgi	8.26	14.66
VIT_18s0001g06520.t01	Wine grape	plastid	11.51	14.19
VIT_07s0104g00370.t01	Wine grape	plasma membrane, plastid, vacuole	9.73	10.54
VIT_11s0078g00380.t01	Wine grape	cytosol	2.51	7.77

Protein Annotations

EntrezGene:100247866	wikigene:100247866	Gene3D:2.60.40.10	Gene3D:2.60.40.1130	Gene3D:2.60.40.1180	MapMan:3.2.3.3.2.2
Gene3D:3.20.20.80	ProteinID:CBI31395	ProteinID:CBI31395.3	UniProt:D7TM28	EMBL:FN595998	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0051060	InterPro:Glyco_hydro_13_N	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	InterPro:IPR013783
InterPro:Ig-like_fold	InterPro:Ig_E-set	EntrezGene:LOC100247866	wikigene:LOC100247866	PFAM:PF02922	PFAM:PF11852
PANTHER:PTHR43631	InterPro:Pullul_strch	InterPro:Pullul_strch_C	SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF81296
TIGRFAMs:TIGR02103	UniParc:UPI0001BE350F	ArrayExpress:VIT_13s0019g05160	EnsemblPlantsGene:VIT_13s0019g05160	EnsemblPlants:VIT_13s0019g05160.t01	RefSeq:XP_002271820
RefSeq:XP_002271820.2	RefSeq:XP_002271820.3	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr13:+:6937392..6997802

Molecular Weight (calculated)

105762.0 Da

IEP (calculated)

5.057

GRAVY (calculated)

-0.196

Length

956 amino acids

Sequence
(BLAST)

001: MALSLSPPLS LLPITPSSNP NYHFPSRFAF KPFPTSTPLS FPTLPRTFHN QPISFCSCLP MPLEVSTSTA QLQDSLLYSR AYWVSESIIA WNVDVGDGSC
101: YLYSSKIAAL SIGDSGITGH DMTIQLEEDN GGLPINVIEK FPQLQGYKAF KVPQAVDAKS LIKCQLAVAA FSCDGQCNNV TGLQLPGVLD ELFSYEGPLG
201: AIFSKEAVTL YLWAPTAQVV HACIYGDPSG GDPLEIVCLE EFNGVWSASG PKSWEGCYYE YEVSVYHPST LQIEKCTAND PYARGLSADA RRTLLVNLDS
301: DDLKPEGWDN LADEKPALLS FSDISIYELH IRDFSASDHT VHPDFRGGYL AFTSQDSAGI LHLKKLCNAG ISHLHLLPTF QFAGVDDEKD KWKCVDPNIL
401: ETLPPDSVEQ QAQIMTIQDE DGYNWGYNPV LWGVPKGSYA SNPNSPCRTL EFRKMVQALN RIGFRVVLDV VYNHLHGSGP FDENSVLDKI VPGYYLRRNS
501: DGCIEHSACV NNTASEHFMV ERLILDDLLC WAVDYKVDGF RFDLMGHIMK RTMVKAKNML HSLSKDTDGI DGSSIYIYGE GWDFGEVAKN GRGVNASQFN
601: LCGTGIGSFN DRIRDAMLGG SPFGHPLQQG FVTGLFLQPN DHDHGGEEVA ERMLAVSKDH IQVGMAANLK DFVLTNCEGE EVKGSEVSTY DGTPVAYTVC
701: PTETINYVSA HDNETLFDIV SLKTPMQISV EERCRINHLA TSIIALSQGI PFFHSGDEML RSKSIDRDSY NSGDWFNRLD FSYNSNNWGV GLPPKEKNEK
801: NWPLIKPRLA DPSFKPQKNH IIAAVENFLN LLKIRYSSPL FRLRTANSIQ ARVRFHNTGP SWVPGIIVMS IEDGHEGVPG LSQLDPVYSY IVVIINPSPT
901: EIKFASPALQ ARTLQLHPVQ VMSSDGVIKN STYEASSGCF IVPPRTTSVF VEPREI

Best Arabidopsis Sequence Match ( AT5G04360.1 )
(BLAST)

001: MALTLTPTSS VHLLSSISVA RPRIFAADFN LRSRWRRRRP VTSISNFRLR LPSKTSLHCL CSSSSASSPM SLEVSSPNSQ FLDCLIYSRA YWVTQGVIAW
101: NVDVGEGSCY FYASKSAGLS FSEDGIDGYD LRIKLEAESG SLPADVIEKF PHIRNYKSFK VPKDLDIRDL VKSQLAVVCF DAEGRLIQGT GLQLPGVLDE
201: LFSYDGPLGA HFTPEGVSLH LWAPTAQAVS VCIYKNPLDK SPMEICPLKE ANGVWSTEGA CSWGGCYYVY KVSVYHPSTM KLETCYANDP YARGLSADGR
301: KTFLVNLDSD DLKPEGWDNL ADKKPCLRSF SDISIYELHV RDFSANDETV EPENRGGYLA FTSKDSAGVK HLQKLVDAGL THLHLLPTFQ FGDVDDEKEN
401: WKSVDTSLLE GLRPDSTEAQ ARITEIQNDD GYNWGYNPVL WGVPKGSYAS DPTGPCRIIE FRKMVQALNC TGLNVVLDVV YNHLHASGPH DKESVLDKIV
501: PGYYLRRNSD GFIENSTCVN NTASEHYMVD RLIRDDLLNW VVNYKVDGFR FDLMGHIMKA TIVNAKSAIG SLRKETDGVD GSRIYLYGEG WNFGEVAENG
601: RGINASQFNL GGTGIGSFND RIRDATLGGS PFGHPLQQGF ITGLLLQPNA HDHGSEATQE LMLSTAKNHI QTGMAANLKD YMLTNHEGKE VKGSEVLMHD
701: ATPVAYASLP TETINYVSAH DNETLFDIIS LKTPMEISVD ERCRINHLAS SMIALSQGIP FFHAGDEILR SKSLDRDSYN SGDWFNRLDF SYSSNNWGVG
801: LPPKGKNEHN WPLIKPRLQD PSFKPKSSHI VATLHNFLDL LRIRYSSPLF RLDTARAIQE RVRFHNTGPS SIPGAIVMSI EDGHRGIPSV SQIDPIYSLI
901: VVIFNARPSE FSYPSPALKD RKLELHPVQV MSADEIVKKS VYDSFSGGFT VPARTTTVFV ESRNG

Arabidopsis Description

PU1Pullulanase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GTR4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.