Factsheet for TraesCS7A01G133500.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 3
mitochondrion 4
vacuole 1

Predictors

GFP

MS/MS

Papers

golgi: 23128297
golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G034600.1	Wheat	plastid	96.78	97.59
TraesCS7D01G133100.1	Wheat	golgi	97.2	97.2
HORVU7Hr1G027860.4	Barley	cytosol, vacuole	89.41	94.51
Os04t0164900-01	Rice	cytosol, nucleus, plastid	48.18	83.6
KXG25811	Sorghum	plastid	76.74	76.66
Zm00001d004438_P005	Maize	plastid	71.24	70.79
Solyc11g008050.1.1	Tomato	cytosol	28.66	60.39
VIT_13s0019g05160.t01	Wine grape	plastid	57.42	57.85
KRH34652	Soybean	plastid	56.8	57.52
CDY51316	Canola	plastid	56.8	56.39
CDX70233	Canola	plastid	56.28	56.28
AT5G04360.2	Thale cress	plastid	56.18	56.06
Bra009461.1-P	Field mustard	plastid	55.56	40.1
CDY47998	Canola	cytosol	25.75	38.15
Bra040385.1-P	Field mustard	cytosol, plasma membrane, plastid	26.79	34.4
TraesCS5A01G248700.1	Wheat	plastid	11.21	13.94
TraesCS1A01G247100.1	Wheat	mitochondrion, plastid	10.18	12.36
TraesCS7A01G251400.1	Wheat	mitochondrion, plastid	9.87	12.03

Protein Annotations

Gene3D:2.60.40.10	Gene3D:2.60.40.1130	Gene3D:2.60.40.1180	MapMan:3.2.3.3.2.2	Gene3D:3.20.20.80	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0051060	InterPro:Glyco_hydro_13_N	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	InterPro:IPR013783
InterPro:Ig-like_fold	InterPro:Ig_E-set	PFAM:PF02922	PFAM:PF11852	PANTHER:PTHR43631	InterPro:Pullul_strch
InterPro:Pullul_strch_C	SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF81296	TIGRFAMs:TIGR02103	EnsemblPlantsGene:TraesCS7A01G133500
EnsemblPlants:TraesCS7A01G133500.2	TIGR:cd02860	TIGR:cd11341	SEG:seg	:	:

Description

No Description!

Coordinates

chr7A:-:85611945..85621344

Molecular Weight (calculated)

106025.0 Da

IEP (calculated)

5.750

GRAVY (calculated)

-0.275

Length

963 amino acids

Sequence
(BLAST)

001: MPMPMRTMLL RHLSPAPALP NPRRSSASSP QRRPARARPP PLHSARATAL RARRTPMAAG ETGASVSVSA AEAEAEATQA FMPDARAYWV TSDLIAWNVS
101: EQEAASVYLY ASRTAAMGLS PSNGGIQGYD SKVELQPESA GLPETVTQKF PFISSYRAFR VPSSVDVASL VKCQLVIASF GADGKHVDVT GLQLPGVLDD
201: IFAYTGPLGA VFREDSVSLH LWAPTAQDVS VCFFDGPAGP VLETVQLKES NGVWSVTGPR EWENRYYLYE VDVYHPTKAQ VLKCLAGDPY ARGLSANGAR
301: TWLVDINNET LKPASWDELA DEKPKLDSFS DITIYELHIR DFSAHDGTVD SDSCGGFRAF AYQASAGMQH LRKLSDAGLT HVHLLPSFHF AGVDDIKSNW
401: KFVDECKLAT FPPGSDMQQE AVVAIQEEDP YNWGYNPVLW GVPKGSYASD PDGPSRIIEY RQMVQALNRI GLRVVMDVVY NHLDSSGPCG ISSVLDKIVP
501: GYYVRRDTNG QIENSAAMNN TASEHFMVDR LIVDDLLNWA VNYKIDGFRF DLMGHIMKHT MMRAKAALQS LTRDAHGVDG SKIYLYGEGW DFAEVARNQR
601: GINGSQLNMS GTGIGSFNDR IRDAVNGGNP FGNPLQQGFN TGLFLEPNGF YQGNEADTRR SLATYADQIQ IGLAGNLRDY VLITHTGETK KGSEIHTFDG
701: LPVGYTSSPI EIINYVSAHD NETLFDVISV KTPMNLSVDE RCRINHLASS MMALSQGIPF FHAGDEILRS KSIDRDSYNS GDWFNKLDFT YETNNWGVGL
801: PPSEKNEDNW PLMKPRLENP SFKPAKGHIL AALDSFVDIL KIRYSSPLFR LSTASDIKQR VHFHNTGPSS VPGVIVMGIE DARDEKPEMA QLDANFSYVV
901: TVFNVCPHEV SMDIPALASM RLELHPVQVN SSDALVGKSV YEAATGRFTV PRRTVSVFVE PRC

Best Arabidopsis Sequence Match ( AT5G04360.1 )
(BLAST)

001: MALTLTPTSS VHLLSSISVA RPRIFAADFN LRSRWRRRRP VTSISNFRLR LPSKTSLHCL CSSSSASSPM SLEVSSPNSQ FLDCLIYSRA YWVTQGVIAW
101: NVDVGEGSCY FYASKSAGLS FSEDGIDGYD LRIKLEAESG SLPADVIEKF PHIRNYKSFK VPKDLDIRDL VKSQLAVVCF DAEGRLIQGT GLQLPGVLDE
201: LFSYDGPLGA HFTPEGVSLH LWAPTAQAVS VCIYKNPLDK SPMEICPLKE ANGVWSTEGA CSWGGCYYVY KVSVYHPSTM KLETCYANDP YARGLSADGR
301: KTFLVNLDSD DLKPEGWDNL ADKKPCLRSF SDISIYELHV RDFSANDETV EPENRGGYLA FTSKDSAGVK HLQKLVDAGL THLHLLPTFQ FGDVDDEKEN
401: WKSVDTSLLE GLRPDSTEAQ ARITEIQNDD GYNWGYNPVL WGVPKGSYAS DPTGPCRIIE FRKMVQALNC TGLNVVLDVV YNHLHASGPH DKESVLDKIV
501: PGYYLRRNSD GFIENSTCVN NTASEHYMVD RLIRDDLLNW VVNYKVDGFR FDLMGHIMKA TIVNAKSAIG SLRKETDGVD GSRIYLYGEG WNFGEVAENG
601: RGINASQFNL GGTGIGSFND RIRDATLGGS PFGHPLQQGF ITGLLLQPNA HDHGSEATQE LMLSTAKNHI QTGMAANLKD YMLTNHEGKE VKGSEVLMHD
701: ATPVAYASLP TETINYVSAH DNETLFDIIS LKTPMEISVD ERCRINHLAS SMIALSQGIP FFHAGDEILR SKSLDRDSYN SGDWFNRLDF SYSSNNWGVG
801: LPPKGKNEHN WPLIKPRLQD PSFKPKSSHI VATLHNFLDL LRIRYSSPLF RLDTARAIQE RVRFHNTGPS SIPGAIVMSI EDGHRGIPSV SQIDPIYSLI
901: VVIFNARPSE FSYPSPALKD RKLELHPVQV MSADEIVKKS VYDSFSGGFT VPARTTTVFV ESRNG

Arabidopsis Description

PU1Pullulanase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GTR4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.