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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:
  • extracellular 2
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • cytosol 2
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plastid
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:secretory
EpiLoc:extracellular
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
YLoc:cytosol
nucleus: 26035336
plastid: 27992503
msms PMID: 26035336 doi
M Li, X Yin, K Sakata, P Yang, S Komatsu
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU7Hr1G027860.4 Barley cytosol, vacuole 83.24 50.71
TraesCS7B01G034600.1 Wheat plastid 83.96 48.8
TraesCS7D01G133100.1 Wheat golgi 83.96 48.39
KXG25811 Sorghum plastid 83.78 48.24
TraesCS7A01G133500.2 Wheat golgi 83.6 48.18
Solyc11g008050.1.1 Tomato cytosol 39.28 47.7
Zm00001d004438_P005 Maize plastid 74.77 42.83
KRH34652 Soybean plastid 69.55 40.59
VIT_13s0019g05160.t01 Wine grape plastid 67.75 39.33
AT5G04360.2 Thale cress plastid 67.03 38.55
CDX70233 Canola plastid 66.49 38.32
CDY51316 Canola plastid 66.85 38.25
CDY47998 Canola cytosol 41.98 35.85
Bra040385.1-P Field mustard cytosol, plasma membrane, plastid 42.16 31.2
Bra009461.1-P Field mustard plastid 64.86 26.99
Os08t0520900-00 Rice cytosol, plastid 13.69 10.48
Os05t0393700-01 Rice cytosol, plastid 12.61 9.42
Os09t0469400-01 Rice plastid 5.41 8.85
Protein Annotations
Gene3D:2.60.40.1180MapMan:3.2.3.3.2.2Gene3D:3.20.20.80UniProt:A0A0P0W7K6ProteinID:BAS87864.1GO:GO:0003674
GO:GO:0003824GO:GO:0004553GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0016787
GO:GO:0051060InterPro:Glyco_hydro_bInterPro:Glycoside_hydrolase_SFInterPro:IPR013780EnsemblPlantsGene:Os04g0164900EnsemblPlants:Os04t0164900-01
PFAM:PF11852PANTHER:PTHR43631InterPro:Pullul_strch_CSUPFAM:SSF51011SUPFAM:SSF51445UniParc:UPI000393B1C7
Description
PULLULANASESimilar to Starch debranching enzyme. (Os04t0164900-01)
Coordinates
chr4:+:4408357..4418889
Molecular Weight (calculated)
62061.4 Da
IEP (calculated)
6.570
GRAVY (calculated)
-0.327
Length
555 amino acids
Sequence
(BLAST)
001: LPSFHFASVD DNKSNWKFVD EAQLAKLPPG SDEQQAAIVS IQQEDPYNWG YDPVLWGVPK GSYASNPDGP SRIIEYRQMV QALNRIGLRV VMDVVYNHLD
101: SSGPFGVSSV LDKIVPGYYL RRNVNGQIEN SAAMNNTASE HFMVDRLIVD DLLNWAINYK VDGFRFDLMG HIMKSTMIRA KSAIRSLTRD VHGVDGSKIY
201: LYGEGWDFGE VAQNKRGINA SQINMSGTGI GSFNDRIRDS VNGGNPFGNP LQQGFSTGLF LEIGLAGNLK DYVLRTHTGE AKKGSDIYTF DGSPVGYTSS
301: PVETINYVSA HDNETLFDIV SIKTPIGLSI DEKCRINHLA SSMIALSQGI PFFHAGDEIL RSKSLDRDSY NSGDWFNKLD FTYETNNWGV GLPPRDKNEE
401: NWHLIKPRLE NPSFRPLKNH ILSVFDNFVD ILKIRYSSPL FRLSTASDIE QRVRFHNTGP SMVPGVIVMS IKDAQNEKCK MAQLDKNFSY VVTIFNVCPH
501: EVSIEIHDLA SLGLELHPIQ VNSSDALVRQ SAYEASKGRF TVPRRTTAVF VQPRC
Best Arabidopsis Sequence Match ( AT5G04360.1 )
(BLAST)
001: MALTLTPTSS VHLLSSISVA RPRIFAADFN LRSRWRRRRP VTSISNFRLR LPSKTSLHCL CSSSSASSPM SLEVSSPNSQ FLDCLIYSRA YWVTQGVIAW
101: NVDVGEGSCY FYASKSAGLS FSEDGIDGYD LRIKLEAESG SLPADVIEKF PHIRNYKSFK VPKDLDIRDL VKSQLAVVCF DAEGRLIQGT GLQLPGVLDE
201: LFSYDGPLGA HFTPEGVSLH LWAPTAQAVS VCIYKNPLDK SPMEICPLKE ANGVWSTEGA CSWGGCYYVY KVSVYHPSTM KLETCYANDP YARGLSADGR
301: KTFLVNLDSD DLKPEGWDNL ADKKPCLRSF SDISIYELHV RDFSANDETV EPENRGGYLA FTSKDSAGVK HLQKLVDAGL THLHLLPTFQ FGDVDDEKEN
401: WKSVDTSLLE GLRPDSTEAQ ARITEIQNDD GYNWGYNPVL WGVPKGSYAS DPTGPCRIIE FRKMVQALNC TGLNVVLDVV YNHLHASGPH DKESVLDKIV
501: PGYYLRRNSD GFIENSTCVN NTASEHYMVD RLIRDDLLNW VVNYKVDGFR FDLMGHIMKA TIVNAKSAIG SLRKETDGVD GSRIYLYGEG WNFGEVAENG
601: RGINASQFNL GGTGIGSFND RIRDATLGGS PFGHPLQQGF ITGLLLQPNA HDHGSEATQE LMLSTAKNHI QTGMAANLKD YMLTNHEGKE VKGSEVLMHD
701: ATPVAYASLP TETINYVSAH DNETLFDIIS LKTPMEISVD ERCRINHLAS SMIALSQGIP FFHAGDEILR SKSLDRDSYN SGDWFNRLDF SYSSNNWGVG
801: LPPKGKNEHN WPLIKPRLQD PSFKPKSSHI VATLHNFLDL LRIRYSSPLF RLDTARAIQE RVRFHNTGPS SIPGAIVMSI EDGHRGIPSV SQIDPIYSLI
901: VVIFNARPSE FSYPSPALKD RKLELHPVQV MSADEIVKKS VYDSFSGGFT VPARTTTVFV ESRNG
Arabidopsis Description
PU1Pullulanase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GTR4]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.