Factsheet for Zm00001d005948_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, plastid

Predictor Summary:

plastid 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, plastid
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77333	Canola	cytosol	11.0	43.81
Bra014111.1-P	Field mustard	mitochondrion	12.2	35.66
CDY05042	Canola	cytosol	21.53	32.73
CDY60217	Canola	extracellular	11.48	27.91
CDX77349	Canola	mitochondrion	23.45	25.13
Bra014108.1-P	Field mustard	cytosol	12.44	25.12
Zm00001d020799_P003	Maize	mitochondrion	28.71	14.96
GSMUA_Achr9P14980_001	Banana	cytosol	24.88	14.55
Solyc06g009220.2.1	Tomato	plastid	25.6	14.48
Bra000667.1-P	Field mustard	plastid	24.4	14.17
CDX90708	Canola	plastid	24.4	13.56
AT4G09020.1	Thale cress	plastid	24.64	13.48
VIT_18s0001g06520.t01	Wine grape	plastid	24.16	13.03
KRH53006	Soybean	plastid	23.45	12.69
PGSC0003DMT400018766	Potato	cytosol	7.42	12.55
KRH62296	Soybean	plastid	23.45	12.52
PGSC0003DMT400018765	Potato	cytosol	5.5	10.04
Zm00001d049753_P001	Maize	mitochondrion, plastid	18.9	9.47
Zm00001d024985_P004	Maize	plastid	5.02	9.33
CDY70211	Canola	plastid	12.2	9.24
Zm00001d050508_P001	Maize	cytosol	1.67	8.86
Zm00001d050532_P001	Maize	extracellular	6.94	7.14
Zm00001d038121_P001	Maize	plastid	13.4	6.37
Zm00001d004438_P005	Maize	plastid	8.37	3.61
Zm00001d016045_P001	Maize	plastid	2.39	2.71
Zm00001d052844_P001	Maize	cytosol	0.96	2.34
Zm00001d005949_P001	Maize	cytosol, mitochondrion, vacuole	1.2	1.79

Protein Annotations

EnsemblPlants:Zm00001d005948_P001	EnsemblPlants:Zm00001d005948_T001	EnsemblPlantsGene:Zm00001d005948	Gene3D:3.20.20.80	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:Glycoside_hydrolase_SF	PANTHER:PTHR43002	ProteinID:ONM22399.1	SEG:seg	SUPFAM:SSF51445
TMHMM:TMhelix	UniParc:UPI000844CD36	UniProt:A0A1D6ERN5	MapMan:3.2.2.6	MapMan:3.2.3.3.2.1	:

Description

Isoamylase 3 chloroplastic

Coordinates

chr2:-:193530287..193553106

Molecular Weight (calculated)

45287.2 Da

IEP (calculated)

6.366

GRAVY (calculated)

-0.302

Length

418 amino acids

Sequence
(BLAST)

001: MSGALGLVRW VVAPGILCAM TMAMPFWGLS QGLGAFGGGR SSPFLRDGRN SSLGREARDR SRTCQPPVSN QGTACQISCI VDTSELHNIA DPLLDCLLAD
101: WETRHSHQPS RIFIAPSCLD LTVDLGGFGP QSSNWSGIST ASRDWIGLQL CPPINYLKPF LRVNLSGFSL SSGMAYGGAT TVKIFYQRRR KTTAGNNIAT
201: IIDDDIAEAH ALGLGLDVDV TAVTPSDPPS DVEGAADTPS ETISRFQGPL LLEYNGTVRR ADADSTVPLR HEVGDPGMKG VFATRVSGSA DLYQVNNRKP
301: YHSVNFVIAH DGFTLCDLVS YNSKHNDANG EGGRDGCNDN YSWNCGIEGG TNDLNVLSLR SRQMKNFHVA LMISQGTPMM LMGDEYGHTR YGNNNSYGHD
401: THINNFQWGQ RYANVLSN

Best Arabidopsis Sequence Match ( AT2G39930.1 )
(BLAST)

001: MDAIKCSSSF LHHTKLNTLF SNHTFPKISA PNFKPLFRPI SISAKDRRSN EAENIAVVEK PLKSDRFFIS DGLPSPFGPT VRDDGVNFSV YSTNSVSATI
101: CLISLSDLRQ NKVTEEIQLD PSRNRTGHVW HVFLRGDFKD MLYGYRFDGK FSPEEGHYYD SSNILLDPYA KAIISRDEFG VLGPDDNCWP QMACMVPTRE
201: EEFDWEGDMH LKLPQKDLVI YEMHVRGFTR HESSKIEFPG TYQGVAEKLD HLKELGINCI ELMPCHEFNE LEYYSYNTIL GDHRVNFWGY STIGFFSPMI
301: RYASASSNNF AGRAINEFKI LVKEAHKRGI EVIMDVVLNH TAEGNEKGPI FSFRGVDNSV YYMLAPKGEF YNYSGCGNTF NCNHPVVRQF ILDCLRYWVT
401: EMHVDGFRFD LGSIMSRSSS LWDAANVYGA DVEGDLLTTG TPISCPPVID MISNDPILRG VKLIAEAWDA GGLYQVGMFP HWGIWSEWNG KFRDVVRQFI
501: KGTDGFSGAF AECLCGSPNL YQGGRKPWHS INFICAHDGF TLADLVTYNN KNNLANGEEN NDGENHNYSW NCGEEGDFAS ISVKRLRKRQ MRNFFVSLMV
601: SQGVPMIYMG DEYGHTKGGN NNTYCHDNYM NYFRWDKKEE AHSDFFRFCR ILIKFRDECE SLGLNDFPTA KRLQWHGLAP EIPNWSETSR FVAFSLVDSV
701: KKEIYVAFNT SHLATLVSLP NRPGYRWEPF VDTSKPSPYD CITPDLPERE TAMKQYRHFL DANVYPMLSY SSIILLLSPI KDP

Arabidopsis Description

ISA1ISA1 [Source:UniProtKB/TrEMBL;Acc:A0A178VW25]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.