Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70438 | Canola | cytosol | 93.72 | 91.74 |
| CDX91181 | Canola | cytosol | 93.72 | 91.58 |
| CDY67814 | Canola | cytosol | 93.36 | 91.39 |
| Bra006136.1-P | Field mustard | cytosol, nucleus, peroxisome | 96.77 | 90.44 |
| AT5G11980.1 | Thale cress | cytosol | 90.84 | 88.93 |
| EER92716 | Sorghum | cytosol | 64.45 | 60.54 |
| Os12t0538300-01 | Rice | cytosol | 66.07 | 60.33 |
| TraesCS5B01G101300.1 | Wheat | cytosol | 65.53 | 59.93 |
| TraesCS5D01G107800.1 | Wheat | cytosol | 65.35 | 59.77 |
| TraesCS5A01G095100.1 | Wheat | cytosol | 65.35 | 59.0 |
| CDY17117 | Canola | extracellular | 8.8 | 58.33 |
| HORVU5Hr1G025740.13 | Barley | vacuole | 65.35 | 56.35 |
| CDY04606 | Canola | cytosol | 8.44 | 47.96 |
Protein Annotations
| EnsemblPlants:CDX78461 | EnsemblPlantsGene:GSBRNA2T00129850001 | GO:A0A078CMR2 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005794 | GO:GO:0017119 | InterPro:COG8 | InterPro:COG8_Metazoal_Plant | InterPro:Cullin_repeat-like_dom_sf |
| PANTHER:PTHR21311 | PFAM:PF04124 | PIRSF:PIRSF015415 | ProteinID:CDX78461 | ProteinID:CDX78461.1 | SEG:seg |
| SUPFAM:SSF74788 | UniParc:UPI0004EEB436 | MapMan:22.6.2.8 | : | : | : |
Description
BnaA03g03730D
Coordinates
chrLK031815:-:866711..870241
Molecular Weight (calculated)
62302.1 Da
IEP (calculated)
4.962
GRAVY (calculated)
-0.088
Length
557 amino acids
Sequence
(BLAST)
(BLAST)
001: MATEIMSPPG ETATPYVSEH LSFTLDRLHK EPELLRVDAE RIQRQMQEVA VWNYRAFITA ADALLAIRQQ VSFIDKHLES LICQVPKLMS GCTEFIDSAE
101: SILEKRKMNQ ALLANHSTLL DLLEIPQLMD TCVRNGNFDE ALDLEAFVSK LATMHPKLPV IQALAAEVRQ TTQSLLSQLL QKLRSNIQLP ECLRIIGYLR
201: RIGVFGEYEM RLQFLRCREA WLTGILEDLD QKNAYEYLKG MINCHRMHLF DVVNQYRAIF ADDTSGSEEN YDGGLLFSWA MHQITSHLKT LKIMLPEITE
301: GGSLSNILDQ CMYCAMGLGW VGLDFRGLLP PLFEEAVLNL FSKNMNTAVE NFQLVLDSHR WVPLPSVGFP SSGINDDSKD DVTPPSYLME HPPLAVFING
401: VSAALNELRP CAPLSLKNVI AHELIKGFQA VSDSLLRYNT TRMLRLNESK LFLSLCRAFV EVVFPHCATC FGRCYPGGAS IVMDAKSAYD GLSRILAASS
501: SPEPSNKLVK TISTDATSAS ENGIASQVEE KQVESPNEKE EDSPIPLQIP ETTPHES
101: SILEKRKMNQ ALLANHSTLL DLLEIPQLMD TCVRNGNFDE ALDLEAFVSK LATMHPKLPV IQALAAEVRQ TTQSLLSQLL QKLRSNIQLP ECLRIIGYLR
201: RIGVFGEYEM RLQFLRCREA WLTGILEDLD QKNAYEYLKG MINCHRMHLF DVVNQYRAIF ADDTSGSEEN YDGGLLFSWA MHQITSHLKT LKIMLPEITE
301: GGSLSNILDQ CMYCAMGLGW VGLDFRGLLP PLFEEAVLNL FSKNMNTAVE NFQLVLDSHR WVPLPSVGFP SSGINDDSKD DVTPPSYLME HPPLAVFING
401: VSAALNELRP CAPLSLKNVI AHELIKGFQA VSDSLLRYNT TRMLRLNESK LFLSLCRAFV EVVFPHCATC FGRCYPGGAS IVMDAKSAYD GLSRILAASS
501: SPEPSNKLVK TISTDATSAS ENGIASQVEE KQVESPNEKE EDSPIPLQIP ETTPHES
001: MAMEVGEMSQ PEATASLLSL ASATQQPYVS ELLSFTLDRL HKEPELLRVD AERIQRQMQE VAVGNYRAFI TAADALLAIR QEVSSIDKHL ESLIGEVPKL
101: TSGCTEFIDS AENILEKRKM NQALLANHST LLDLLEIPQL MDTCVRNGNF DEALDLEAFV SKLATLHPKL PVIQALAAEV RQTTQSLLSQ LLQKLRSNIQ
201: LPECLRIIGY LRRIGVFGEY EMRLQFLRCR EAWLTGILED LDQKNAYEYL KGMINCHRMH LFDVVNQYRA IFSDDTSGSE ENYDGGLLFS WAMHQITSHL
301: KTLKIMLPKI TEGGSLSNIL DQCMYCAMGL GGVGLDFRGL LPPLFEEAVL NLFSKNMSTA VENFQLVLDS HRWVPLPSVG FPSSGINEDS KDDVTPPSYL
401: MEHPPLAVFI NGVSSALNEL RPCAPLSLKN VVAHELIKGL QAVSDSLLRY NTTRMLRLSE SNLFLSLCRA FVEVVFPHCA TCFGRCYPGG ATIVMDAKSA
501: YEGLGRILAA SSSQEPSNKS PKVISTDTKD ASENGVASQP EEKQAENPNA KEEDNSPIPL QTPEITPES
101: TSGCTEFIDS AENILEKRKM NQALLANHST LLDLLEIPQL MDTCVRNGNF DEALDLEAFV SKLATLHPKL PVIQALAAEV RQTTQSLLSQ LLQKLRSNIQ
201: LPECLRIIGY LRRIGVFGEY EMRLQFLRCR EAWLTGILED LDQKNAYEYL KGMINCHRMH LFDVVNQYRA IFSDDTSGSE ENYDGGLLFS WAMHQITSHL
301: KTLKIMLPKI TEGGSLSNIL DQCMYCAMGL GGVGLDFRGL LPPLFEEAVL NLFSKNMSTA VENFQLVLDS HRWVPLPSVG FPSSGINEDS KDDVTPPSYL
401: MEHPPLAVFI NGVSSALNEL RPCAPLSLKN VVAHELIKGL QAVSDSLLRY NTTRMLRLSE SNLFLSLCRA FVEVVFPHCA TCFGRCYPGG ATIVMDAKSA
501: YEGLGRILAA SSSQEPSNKS PKVISTDTKD ASENGVASQP EEKQAENPNA KEEDNSPIPL QTPEITPES
Arabidopsis Description
Conserved oligomeric Golgi complex component-related / COG complex component-like protein [Source:UniProtKB/TrEMBL;Acc:Q84K25]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.