Factsheet for Bra006136.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, peroxisome

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000872.1-P
Bra016661.1-P
Bra018126.1-P
Bra018539.1-P
Bra025713.1-P
Bra026137.1-P
Bra026767.1-P
Bra036256.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11980.1	Bra016661.1-P	AT1G15385.1	21798944
AT5G11980.1	Bra026137.1-P	AT1G15385.1	21798944
AT5G11980.1	Bra026767.1-P	AT1G15385.1	21798944
AT5G11980.1	Bra025713.1-P	AT1G19180.1	21798944
AT5G11980.1	Bra018126.1-P	AT3G47620.1	21798944
AT5G11980.1	Bra000872.1-P	AT4G02590.1	21798944
AT5G11980.1	Bra018539.1-P	AT4G02590.1	21798944
AT5G11980.1	Bra036256.1-P	AT4G02590.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78461	Canola	cytosol	90.44	96.77
Bra023354.1-P	Field mustard	cytosol	90.27	94.55
AT5G11980.1	Thale cress	cytosol	86.58	90.69
VIT_04s0008g01350.t01	Wine grape	cytosol	72.82	76.01
PGSC0003DMT400017657	Potato	nucleus	72.99	75.39
KRH69706	Soybean	cytosol	73.15	75.17
Solyc01g087650.2.1	Tomato	plastid	72.32	74.83
KRH07953	Soybean	cytosol	72.15	74.39
Os12t0538300-01	Rice	cytosol	62.92	61.48
EER92716	Sorghum	cytosol	61.07	61.38
TraesCS5B01G101300.1	Wheat	cytosol	62.25	60.92
TraesCS5D01G107800.1	Wheat	cytosol	62.08	60.76
TraesCS5A01G095100.1	Wheat	cytosol	62.08	59.97
HORVU5Hr1G025740.13	Barley	vacuole	62.08	57.28
Zm00001d006805_P001	Maize	cytosol, mitochondrion, nucleus	9.06	49.09
Zm00001d028871_P001	Maize	nucleus	9.06	49.09
Zm00001d053677_P001	Maize	cytosol, mitochondrion, nucleus	9.06	49.09
GSMUA_Achr3P32460_001	Banana	extracellular, nucleus, plasma membrane	34.73	48.36

Protein Annotations

MapMan:22.6.2.8	EnsemblPlantsGene:Bra006136	EnsemblPlants:Bra006136.1	EnsemblPlants:Bra006136.1-P	InterPro:COG8	InterPro:COG8_Metazoal_Plant
InterPro:Cullin_repeat-like_dom_sf	GO:GO:0000139	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0006810	GO:GO:0006891	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020
GO:GO:0017119	UniProt:M4CPJ7	PFAM:PF04124	PIRSF:PIRSF015415	SUPFAM:SSF74788	UniParc:UPI000253F975
SEG:seg	:	:	:	:	:

Description

AT5G11980 (E=2e-158) | conserved oligomeric Golgi complex component-related / COG complex component-related

Coordinates

chrA03:-:2164159..2167564

Molecular Weight (calculated)

66544.4 Da

IEP (calculated)

5.032

GRAVY (calculated)

-0.017

Length

596 amino acids

Sequence
(BLAST)

001: MATEMMSPPG ETASLLSHAS ASQQPYVSEL LSFTLDRLHK EPELLRVDAE RTQRQMQEVA VGNYRAFITA ADALLAIRQQ VSFIDKHLES LICQVPKLMS
101: GCTEFIDSAE SILEKRKMNQ ALLANHSTLL DLLEIPQLMD TCVRNGNFDE ALDLEAFVSK LATMHPKLPV IQALAAEVRQ TTQSLLSQLL QKLRSNIQLP
201: ECVRIIGYLR RIGVFGEYEM RLQFLRCREA WLTGILEDLD QKNAYEYLKG MINCHRMHLF DVVNQYRAIF ADDTSGSEEN YDGGLLFSWA MHQITSHLKT
301: LKIMLPKITE GGSLSNILDQ CMVEFFCISY SPFRVLCATL IDIYLLLMTI QYCAMGLGWV GLDFRGLLPP LFEEAVLNLF SKNMNTAVEN FQLVLDSHRW
401: VPLPSVGFPS SGINDDSKDD VTPPSYLMEH PPLAVFINGV SAALNELRPC APLSLKNVIA HELIKGFQAV SDSLLRYNTT RMLRLNESKL FLSLCRAFVE
501: VVFPHCATCF GRCYPGGASI VMDAKSAYDG LSRILAASSS PEPSNKLVKT ISTDATSASE NGIASQVEEK QVESPNEKEE DSPIPLQIPE TTPHES

Best Arabidopsis Sequence Match ( AT5G11980.1 )
(BLAST)

001: MAMEVGEMSQ PEATASLLSL ASATQQPYVS ELLSFTLDRL HKEPELLRVD AERIQRQMQE VAVGNYRAFI TAADALLAIR QEVSSIDKHL ESLIGEVPKL
101: TSGCTEFIDS AENILEKRKM NQALLANHST LLDLLEIPQL MDTCVRNGNF DEALDLEAFV SKLATLHPKL PVIQALAAEV RQTTQSLLSQ LLQKLRSNIQ
201: LPECLRIIGY LRRIGVFGEY EMRLQFLRCR EAWLTGILED LDQKNAYEYL KGMINCHRMH LFDVVNQYRA IFSDDTSGSE ENYDGGLLFS WAMHQITSHL
301: KTLKIMLPKI TEGGSLSNIL DQCMYCAMGL GGVGLDFRGL LPPLFEEAVL NLFSKNMSTA VENFQLVLDS HRWVPLPSVG FPSSGINEDS KDDVTPPSYL
401: MEHPPLAVFI NGVSSALNEL RPCAPLSLKN VVAHELIKGL QAVSDSLLRY NTTRMLRLSE SNLFLSLCRA FVEVVFPHCA TCFGRCYPGG ATIVMDAKSA
501: YEGLGRILAA SSSQEPSNKS PKVISTDTKD ASENGVASQP EEKQAENPNA KEEDNSPIPL QTPEITPES

Arabidopsis Description

Conserved oligomeric Golgi complex component-related / COG complex component-like protein [Source:UniProtKB/TrEMBL;Acc:Q84K25]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.