Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX91181 | Canola | cytosol | 92.44 | 92.28 |
| Bra023354.1-P | Field mustard | cytosol | 92.09 | 92.09 |
| CDY67814 | Canola | cytosol | 92.09 | 92.09 |
| CDX70438 | Canola | cytosol | 91.74 | 91.74 |
| CDX78461 | Canola | cytosol | 88.93 | 90.84 |
| Bra006136.1-P | Field mustard | cytosol, nucleus, peroxisome | 90.69 | 86.58 |
| VIT_04s0008g01350.t01 | Wine grape | cytosol | 76.27 | 76.01 |
| PGSC0003DMT400017657 | Potato | nucleus | 76.27 | 75.22 |
| KRH69706 | Soybean | cytosol | 76.45 | 75.0 |
| Solyc01g087650.2.1 | Tomato | plastid | 75.92 | 75.0 |
| KRH07953 | Soybean | cytosol | 75.57 | 74.39 |
| EER92716 | Sorghum | cytosol | 65.03 | 62.39 |
| Os12t0538300-01 | Rice | cytosol | 65.55 | 61.15 |
| TraesCS5B01G101300.1 | Wheat | cytosol | 65.38 | 61.08 |
| TraesCS5D01G107800.1 | Wheat | cytosol | 65.03 | 60.76 |
| TraesCS5A01G095100.1 | Wheat | cytosol | 65.03 | 59.97 |
| HORVU5Hr1G025740.13 | Barley | vacuole | 65.38 | 57.59 |
| Zm00001d028871_P001 | Maize | nucleus | 9.67 | 50.0 |
| Zm00001d006805_P001 | Maize | cytosol, mitochondrion, nucleus | 9.49 | 49.09 |
| Zm00001d053677_P001 | Maize | cytosol, mitochondrion, nucleus | 9.49 | 49.09 |
| GSMUA_Achr3P32460_001 | Banana | extracellular, nucleus, plasma membrane | 36.91 | 49.07 |
Protein Annotations
| MapMan:22.6.2.8 | EntrezGene:831071 | UniProt:A0A178UDM9 | ProteinID:AED91747.1 | ArrayExpress:AT5G11980 | EnsemblPlantsGene:AT5G11980 |
| RefSeq:AT5G11980 | TAIR:AT5G11980 | RefSeq:AT5G11980-TAIR-G | EnsemblPlants:AT5G11980.1 | TAIR:AT5G11980.1 | Unigene:At.32189 |
| EMBL:BT002913 | EMBL:BT004349 | InterPro:COG8 | InterPro:COG8_Metazoal_Plant | InterPro:Cullin_repeat-like_dom_sf | GO:GO:0000003 |
| GO:GO:0000139 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 |
| GO:GO:0006810 | GO:GO:0006891 | GO:GO:0007030 | GO:GO:0008150 | GO:GO:0009506 | GO:GO:0009653 |
| GO:GO:0009856 | GO:GO:0009860 | GO:GO:0009987 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016043 |
| GO:GO:0016049 | GO:GO:0017119 | GO:GO:0030154 | GO:GO:0040007 | GO:GO:0048193 | RefSeq:NP_568256.1 |
| ProteinID:OAO91307.1 | PFAM:PF04124 | PIRSF:PIRSF015415 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR21311 | UniProt:Q84K25 | SUPFAM:SSF74788 |
| UniParc:UPI000000BE35 | SEG:seg | : | : | : | : |
Description
Conserved oligomeric Golgi complex component-related / COG complex component-like protein [Source:UniProtKB/TrEMBL;Acc:Q84K25]
Coordinates
chr5:-:3868652..3872300
Molecular Weight (calculated)
63055.8 Da
IEP (calculated)
4.818
GRAVY (calculated)
-0.118
Length
569 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMEVGEMSQ PEATASLLSL ASATQQPYVS ELLSFTLDRL HKEPELLRVD AERIQRQMQE VAVGNYRAFI TAADALLAIR QEVSSIDKHL ESLIGEVPKL
101: TSGCTEFIDS AENILEKRKM NQALLANHST LLDLLEIPQL MDTCVRNGNF DEALDLEAFV SKLATLHPKL PVIQALAAEV RQTTQSLLSQ LLQKLRSNIQ
201: LPECLRIIGY LRRIGVFGEY EMRLQFLRCR EAWLTGILED LDQKNAYEYL KGMINCHRMH LFDVVNQYRA IFSDDTSGSE ENYDGGLLFS WAMHQITSHL
301: KTLKIMLPKI TEGGSLSNIL DQCMYCAMGL GGVGLDFRGL LPPLFEEAVL NLFSKNMSTA VENFQLVLDS HRWVPLPSVG FPSSGINEDS KDDVTPPSYL
401: MEHPPLAVFI NGVSSALNEL RPCAPLSLKN VVAHELIKGL QAVSDSLLRY NTTRMLRLSE SNLFLSLCRA FVEVVFPHCA TCFGRCYPGG ATIVMDAKSA
501: YEGLGRILAA SSSQEPSNKS PKVISTDTKD ASENGVASQP EEKQAENPNA KEEDNSPIPL QTPEITPES
101: TSGCTEFIDS AENILEKRKM NQALLANHST LLDLLEIPQL MDTCVRNGNF DEALDLEAFV SKLATLHPKL PVIQALAAEV RQTTQSLLSQ LLQKLRSNIQ
201: LPECLRIIGY LRRIGVFGEY EMRLQFLRCR EAWLTGILED LDQKNAYEYL KGMINCHRMH LFDVVNQYRA IFSDDTSGSE ENYDGGLLFS WAMHQITSHL
301: KTLKIMLPKI TEGGSLSNIL DQCMYCAMGL GGVGLDFRGL LPPLFEEAVL NLFSKNMSTA VENFQLVLDS HRWVPLPSVG FPSSGINEDS KDDVTPPSYL
401: MEHPPLAVFI NGVSSALNEL RPCAPLSLKN VVAHELIKGL QAVSDSLLRY NTTRMLRLSE SNLFLSLCRA FVEVVFPHCA TCFGRCYPGG ATIVMDAKSA
501: YEGLGRILAA SSSQEPSNKS PKVISTDTKD ASENGVASQP EEKQAENPNA KEEDNSPIPL QTPEITPES
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.