Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g087650.2.1 | Tomato | plastid | 95.84 | 96.01 |
| VIT_04s0008g01350.t01 | Wine grape | cytosol | 80.42 | 81.26 |
| KRH69706 | Soybean | cytosol | 78.34 | 77.93 |
| KRH07953 | Soybean | cytosol | 77.99 | 77.85 |
| Bra023354.1-P | Field mustard | cytosol | 76.08 | 77.15 |
| AT5G11980.1 | Thale cress | cytosol | 75.22 | 76.27 |
| Bra006136.1-P | Field mustard | cytosol, nucleus, peroxisome | 75.39 | 72.99 |
| EER92716 | Sorghum | cytosol | 65.34 | 63.58 |
| Os12t0538300-01 | Rice | cytosol | 66.03 | 62.46 |
| TraesCS5B01G101300.1 | Wheat | cytosol | 65.34 | 61.9 |
| TraesCS5D01G107800.1 | Wheat | cytosol | 65.34 | 61.9 |
| TraesCS5A01G095100.1 | Wheat | cytosol | 64.99 | 60.78 |
| HORVU5Hr1G025740.13 | Barley | vacuole | 65.34 | 58.36 |
| Zm00001d028871_P001 | Maize | nucleus | 9.36 | 49.09 |
| GSMUA_Achr3P32460_001 | Banana | extracellular, nucleus, plasma membrane | 36.4 | 49.07 |
| Zm00001d006805_P001 | Maize | cytosol, mitochondrion, nucleus | 9.19 | 48.18 |
| Zm00001d053677_P001 | Maize | cytosol, mitochondrion, nucleus | 9.19 | 48.18 |
| CDY04606 | Canola | cytosol | 7.8 | 45.92 |
Protein Annotations
| EntrezGene:102579290 | MapMan:22.6.2.8 | InterPro:COG8 | InterPro:COG8_Metazoal_Plant | InterPro:Cullin_repeat-like_dom_sf | GO:GO:0000139 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0006810 |
| GO:GO:0006891 | GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0017119 | UniProt:M1A991 |
| PFAM:PF04124 | EnsemblPlantsGene:PGSC0003DMG400006851 | PGSC:PGSC0003DMG400006851 | EnsemblPlants:PGSC0003DMT400017657 | PIRSF:PIRSF015415 | PANTHER:PTHR21311 |
| SUPFAM:SSF74788 | UniParc:UPI000296355E | RefSeq:XP_006345415.1 | SEG:seg | : | : |
Description
Conserved oligomeric Golgi complex component [Source:PGSC_GENE;Acc:PGSC0003DMG400006851]
Coordinates
chr1:-:65263842..65272302
Molecular Weight (calculated)
64490.4 Da
IEP (calculated)
4.844
GRAVY (calculated)
-0.161
Length
577 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMDSEDPMD EASPVTGFLP LASASQQPYI SELLSFTLDR LHKEPELLRV DAERIRRQMQ EVAVGNYRAF ISAADALHAI REEVSSVDKH LDSLINEIPK
101: LTSGCSEFST SAELILEKRK MNQTLLANHS TLLDLLEIPQ LMDTCVRNGN YDEALDLEAF VSKLSAMHPK LPVIQALAAE VRQTTQSLLF QLLQRLRSNI
201: QLPECLRIIG YLRRIGVFNE YEMRLQFLRC RQAWLSGILD DLDQRNAYEY LKGMVNCHRM HLFDVVNQYR AIFADDTSGR EENYDGGLLF SWAMHQISSH
301: LRTLKMMLPK ITEGGSLSNI LDQCMYCAMG LGWVGLDFRG LLPPLFEEAV LNLFSKNMNA AVENFQLVLD SHRWVPLPAV GFSTSSLSEE SHEDVTPPSS
401: LMEHPPLAVF VNGVSAAMNE LRPCAPLSLK HVLAQELAKG LQAVSDALLR YNTTRMLREN ESLLFLSLCR AFIEVAFPHC VTCFGRCYPG GAALIADATT
501: LFDGISRLLA TSSSRELPKP VRNPEVNSIS ENGDVPKKEN GEIPSTEQPE STNAEEEPNN VPSENEEKPG NVKSICI
101: LTSGCSEFST SAELILEKRK MNQTLLANHS TLLDLLEIPQ LMDTCVRNGN YDEALDLEAF VSKLSAMHPK LPVIQALAAE VRQTTQSLLF QLLQRLRSNI
201: QLPECLRIIG YLRRIGVFNE YEMRLQFLRC RQAWLSGILD DLDQRNAYEY LKGMVNCHRM HLFDVVNQYR AIFADDTSGR EENYDGGLLF SWAMHQISSH
301: LRTLKMMLPK ITEGGSLSNI LDQCMYCAMG LGWVGLDFRG LLPPLFEEAV LNLFSKNMNA AVENFQLVLD SHRWVPLPAV GFSTSSLSEE SHEDVTPPSS
401: LMEHPPLAVF VNGVSAAMNE LRPCAPLSLK HVLAQELAKG LQAVSDALLR YNTTRMLREN ESLLFLSLCR AFIEVAFPHC VTCFGRCYPG GAALIADATT
501: LFDGISRLLA TSSSRELPKP VRNPEVNSIS ENGDVPKKEN GEIPSTEQPE STNAEEEPNN VPSENEEKPG NVKSICI
001: MAMEVGEMSQ PEATASLLSL ASATQQPYVS ELLSFTLDRL HKEPELLRVD AERIQRQMQE VAVGNYRAFI TAADALLAIR QEVSSIDKHL ESLIGEVPKL
101: TSGCTEFIDS AENILEKRKM NQALLANHST LLDLLEIPQL MDTCVRNGNF DEALDLEAFV SKLATLHPKL PVIQALAAEV RQTTQSLLSQ LLQKLRSNIQ
201: LPECLRIIGY LRRIGVFGEY EMRLQFLRCR EAWLTGILED LDQKNAYEYL KGMINCHRMH LFDVVNQYRA IFSDDTSGSE ENYDGGLLFS WAMHQITSHL
301: KTLKIMLPKI TEGGSLSNIL DQCMYCAMGL GGVGLDFRGL LPPLFEEAVL NLFSKNMSTA VENFQLVLDS HRWVPLPSVG FPSSGINEDS KDDVTPPSYL
401: MEHPPLAVFI NGVSSALNEL RPCAPLSLKN VVAHELIKGL QAVSDSLLRY NTTRMLRLSE SNLFLSLCRA FVEVVFPHCA TCFGRCYPGG ATIVMDAKSA
501: YEGLGRILAA SSSQEPSNKS PKVISTDTKD ASENGVASQP EEKQAENPNA KEEDNSPIPL QTPEITPES
101: TSGCTEFIDS AENILEKRKM NQALLANHST LLDLLEIPQL MDTCVRNGNF DEALDLEAFV SKLATLHPKL PVIQALAAEV RQTTQSLLSQ LLQKLRSNIQ
201: LPECLRIIGY LRRIGVFGEY EMRLQFLRCR EAWLTGILED LDQKNAYEYL KGMINCHRMH LFDVVNQYRA IFSDDTSGSE ENYDGGLLFS WAMHQITSHL
301: KTLKIMLPKI TEGGSLSNIL DQCMYCAMGL GGVGLDFRGL LPPLFEEAVL NLFSKNMSTA VENFQLVLDS HRWVPLPSVG FPSSGINEDS KDDVTPPSYL
401: MEHPPLAVFI NGVSSALNEL RPCAPLSLKN VVAHELIKGL QAVSDSLLRY NTTRMLRLSE SNLFLSLCRA FVEVVFPHCA TCFGRCYPGG ATIVMDAKSA
501: YEGLGRILAA SSSQEPSNKS PKVISTDTKD ASENGVASQP EEKQAENPNA KEEDNSPIPL QTPEITPES
Arabidopsis Description
Conserved oligomeric Golgi complex component-related / COG complex component-like protein [Source:UniProtKB/TrEMBL;Acc:Q84K25]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.