Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g065820.2.1 | Tomato | nucleus | 98.34 | 98.34 |
| Bra036256.1-P | Field mustard | nucleus | 60.6 | 80.26 |
| VIT_07s0141g00220.t01 | Wine grape | nucleus | 74.5 | 77.85 |
| KRH32094 | Soybean | nucleus | 71.19 | 75.97 |
| Os07t0182200-01 | Rice | cytosol | 34.11 | 75.74 |
| KRG95612 | Soybean | nucleus | 73.18 | 75.68 |
| KRH67287 | Soybean | nucleus | 72.52 | 75.0 |
| Bra018539.1-P | Field mustard | nucleus | 61.26 | 72.83 |
| KRH55381 | Soybean | cytosol | 16.56 | 72.46 |
| CDX91293 | Canola | nucleus | 69.54 | 70.47 |
| CDY21898 | Canola | nucleus | 70.2 | 70.43 |
| CDY22062 | Canola | nucleus | 70.86 | 70.39 |
| AT4G02590.1 | Thale cress | nucleus | 71.85 | 70.0 |
| CDY18143 | Canola | nucleus | 70.2 | 69.28 |
| CDY18011 | Canola | nucleus | 68.87 | 68.42 |
| CDX97278 | Canola | nucleus | 67.22 | 67.89 |
| CDX89919 | Canola | nucleus | 69.87 | 67.85 |
| Bra033368.1-P | Field mustard | nucleus | 69.87 | 67.85 |
| Bra000872.1-P | Field mustard | nucleus | 68.87 | 67.31 |
| CDX90930 | Canola | nucleus | 68.87 | 67.1 |
| AT1G03040.3 | Thale cress | nucleus | 69.21 | 62.76 |
| OQU88567 | Sorghum | nucleus | 52.98 | 57.76 |
| GSMUA_Achr4P21070_001 | Banana | nucleus | 57.28 | 57.67 |
| GSMUA_Achr5P03100_001 | Banana | nucleus | 52.32 | 57.66 |
| KXG37359 | Sorghum | nucleus | 52.98 | 56.34 |
| Zm00001d018967_P001 | Maize | nucleus | 52.98 | 56.14 |
| Zm00001d013073_P002 | Maize | nucleus | 52.98 | 56.14 |
| TraesCS5D01G449200.1 | Wheat | nucleus | 51.66 | 55.52 |
| TraesCS5B01G445900.1 | Wheat | nucleus | 51.66 | 55.52 |
| PGSC0003DMT400015596 | Potato | nucleus | 54.97 | 54.79 |
| Os03t0797600-01 | Rice | nucleus | 53.31 | 54.76 |
| PGSC0003DMT400034840 | Potato | nucleus | 52.98 | 54.05 |
| TraesCS5A01G441900.1 | Wheat | nucleus | 49.34 | 53.02 |
| GSMUA_Achr9P25560_001 | Banana | nucleus | 57.95 | 49.58 |
| HORVU5Hr1G106310.3 | Barley | nucleus | 50.33 | 48.72 |
| PGSC0003DMT400020244 | Potato | nucleus | 42.38 | 33.51 |
| PGSC0003DMT400028917 | Potato | nucleus | 43.38 | 29.5 |
| PGSC0003DMT400015377 | Potato | nucleus | 12.91 | 19.21 |
| PGSC0003DMT400020534 | Potato | nucleus | 13.91 | 13.38 |
| PGSC0003DMT400010253 | Potato | nucleus | 16.23 | 13.03 |
| PGSC0003DMT400063117 | Potato | nucleus | 15.23 | 10.53 |
| PGSC0003DMT400066807 | Potato | nucleus | 15.23 | 9.91 |
| PGSC0003DMT400038134 | Potato | nucleus | 16.89 | 9.9 |
| PGSC0003DMT400041156 | Potato | nucleus | 16.23 | 9.48 |
| PGSC0003DMT400048756 | Potato | nucleus | 16.89 | 8.82 |
| PGSC0003DMT400047079 | Potato | nucleus | 20.53 | 8.76 |
| PGSC0003DMT400083164 | Potato | nucleus | 10.93 | 7.93 |
Protein Annotations
| EntrezGene:102606091 | MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | UniProt:M1BPA8 | PFAM:PF00010 |
| EnsemblPlantsGene:PGSC0003DMG400019334 | PGSC:PGSC0003DMG400019334 | EnsemblPlants:PGSC0003DMT400049768 | PFscan:PS50888 | PANTHER:PTHR16223 | PANTHER:PTHR16223:SF15 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00018DFD52 | RefSeq:XP_006349737.1 | InterPro:bHLH_dom | SEG:seg |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019334]
Coordinates
chr9:+:48705999..48710519
Molecular Weight (calculated)
32058.0 Da
IEP (calculated)
5.970
GRAVY (calculated)
-0.360
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MANNPSEGPS DDFFDQIMGF PAYNGAETNL AGNDAGAIPP AMMLQLNSGD GSGQFTGVGL GVGLGGGGFH GHGGGASFPL GLSLEQGKGG FLKMDDVSAP
101: GRRFRDDVVD SRASSSVKPG FHGQPMPSMP HPPAIRPRVR ARRGQATDPH SIAERLRRER IAERIRALQE LVPSVNKTDR AVMLDEIVDY VKFLRLQVKV
201: LSMSRLGGAG AVAPLVTDIP ISSVEEESSE GGNNNQPAWE KWSSDGTERQ VAKLMEENVG AAMQFLQSKA LCIMPISLAS AIYHSQPPDT SSLVKPETNP
301: PS
101: GRRFRDDVVD SRASSSVKPG FHGQPMPSMP HPPAIRPRVR ARRGQATDPH SIAERLRRER IAERIRALQE LVPSVNKTDR AVMLDEIVDY VKFLRLQVKV
201: LSMSRLGGAG AVAPLVTDIP ISSVEEESSE GGNNNQPAWE KWSSDGTERQ VAKLMEENVG AAMQFLQSKA LCIMPISLAS AIYHSQPPDT SSLVKPETNP
301: PS
001: MASNNPHDNL SDQTPSDDFF EQILGLPNFS ASSAAGLSGV DGGLGGGAPP MMLQLGSGEE GSHMGGLGGS GPTGFHNQMF PLGLSLDQGK GPGFLRPEGG
101: HGSGKRFSDD VVDNRCSSMK PVFHGQPMQQ PPPSAPHQPT SIRPRVRARR GQATDPHSIA ERLRRERIAE RIRALQELVP TVNKTDRAAM IDEIVDYVKF
201: LRLQVKVLSM SRLGGAGAVA PLVTDMPLSS SVEDETGEGG RTPQPAWEKW SNDGTERQVA KLMEENVGAA MQLLQSKALC MMPISLAMAI YHSQPPDTSS
301: VVKPENNPPQ
101: HGSGKRFSDD VVDNRCSSMK PVFHGQPMQQ PPPSAPHQPT SIRPRVRARR GQATDPHSIA ERLRRERIAE RIRALQELVP TVNKTDRAAM IDEIVDYVKF
201: LRLQVKVLSM SRLGGAGAVA PLVTDMPLSS SVEDETGEGG RTPQPAWEKW SNDGTERQVA KLMEENVGAA MQLLQSKALC MMPISLAMAI YHSQPPDTSS
301: VVKPENNPPQ
Arabidopsis Description
UNE12Transcription factor UNE12 [Source:UniProtKB/Swiss-Prot;Acc:O22768]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.