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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 3
  • vacuole 1
  • cytosol 2
  • mitochondrion 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid, vacuole
BaCelLo:plastid
ChloroP:plastid
EpiLoc:vacuole
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400024428
PGSC0003DMT400026710
PGSC0003DMT400033741
PGSC0003DMT400036790
PGSC0003DMT400043651
PGSC0003DMT400067114
PGSC0003DMT400070884
PGSC0003DMT400074101
PGSC0003DMT400092645

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G02000.1 PGSC0003DMT400043651 AT1G22070.1 19218396
AT3G02000.1 PGSC0003DMT400070884 AT1G22070.1 19218396
AT3G02000.1 PGSC0003DMT400033741 AT1G68640.1 19218396
AT3G02000.1 PGSC0003DMT400043651 AT1G77920.1 19218396
AT3G02000.1 PGSC0003DMT400070884 AT1G77920.1 19218396
AT3G02000.1 PGSC0003DMT400024428 AT5G06960.1 19218396
AT3G02000.1 PGSC0003DMT400026710 AT5G06960.1 19218396
AT5G14070.1 PGSC0003DMT400092645 AT2G05230.1 21798944
AT5G14070.1 PGSC0003DMT400092645 AT2G05250.1 21798944
AT5G14070.1 PGSC0003DMT400036790 AT3G17860.1 21798944
AT5G14070.1 PGSC0003DMT400074101 AT3G17860.1 21798944
AT5G14070.1 PGSC0003DMT400067114 AT4G32570.1 21798944
AT5G14070.1 PGSC0003DMT400024428 AT5G06960.1 21798944
AT5G14070.1 PGSC0003DMT400026710 AT5G06960.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc01g009890.1.1 Tomato cytosol, plastid 95.38 95.38
PGSC0003DMT400013435 Potato cytosol, plastid 78.46 85.0
PGSC0003DMT400013427 Potato mitochondrion, plastid 73.85 80.0
PGSC0003DMT400006076 Potato plastid 72.31 70.15
PGSC0003DMT400058325 Potato cytosol 49.23 62.75
KRH70543 Soybean cytosol 63.85 62.41
GSMUA_Achr10P... Banana cytosol 63.08 60.74
KRG94592 Soybean plastid 61.54 60.61
KRH06898 Soybean plastid 62.31 60.45
EES05136 Sorghum cytosol 59.23 59.69
Zm00001d016593_P001 Maize cytosol 59.23 59.23
KRH01571 Soybean cytosol 64.62 59.15
GSMUA_Achr3P18710_001 Banana cytosol 60.0 58.65
HORVU0Hr1G003840.1 Barley extracellular 60.0 58.21
GSMUA_Achr6P23860_001 Banana plastid 60.0 57.35
TraesCS2B01G302700.1 Wheat cytosol, extracellular 58.46 56.72
TraesCS2D01G284300.1 Wheat cytosol, extracellular 58.46 56.72
TraesCS2A01G285600.1 Wheat cytosol, extracellular 58.46 56.72
Os04t0393500-01 Rice cytosol 58.46 56.3
VIT_01s0146g00220.t01 Wine grape cytosol 66.92 55.77
Os02t0512400-01 Rice cytosol 57.69 55.56
EES10652 Sorghum cytosol 58.46 55.47
Zm00001d003927_P001 Maize cytosol 57.69 54.74
GSMUA_AchrUn_... Banana cytosol 54.62 54.62
CDX91918 Canola cytosol 54.62 52.99
PGSC0003DMT400058374 Potato cytosol 41.54 52.94
AT3G02000.1 Thale cress cytosol 55.38 52.94
PGSC0003DMT400029525 Potato cytosol 40.77 51.96
CDX74327 Canola cytosol 54.62 51.82
Bra000980.1-P Field mustard cytosol 54.62 51.82
Bra006236.1-P Field mustard cytosol 53.85 51.47
CDX78558 Canola cytosol 53.85 51.09
PGSC0003DMT400029597 Potato cytosol 40.0 50.98
Bra008782.1-P Field mustard cytosol 52.31 50.75
Bra023448.1-P Field mustard cytosol 53.08 50.37
CDX70540 Canola cytosol 53.08 50.37
CDX85614 Canola cytosol 53.08 50.37
PGSC0003DMT400027953 Potato cytosol, plastid 38.46 49.51
CDX91084 Canola cytosol 51.54 48.91
PGSC0003DMT400041379 Potato cytosol, plastid 35.38 48.42
PGSC0003DMT400027946 Potato cytosol, plastid 37.69 48.04
PGSC0003DMT400041381 Potato cytosol, plastid 37.69 48.04
PGSC0003DMT400041380 Potato cytosol, plastid 37.69 48.04
AT5G14070.1 Thale cress cytosol 51.54 47.86
PGSC0003DMT400027949 Potato cytosol, plastid 36.92 47.06
PGSC0003DMT400013649 Potato cytosol 36.92 47.06
PGSC0003DMT400027950 Potato cytosol, plastid 36.92 47.06
PGSC0003DMT400041382 Potato cytosol 36.92 47.06
PGSC0003DMT400042706 Potato cytosol 36.92 46.6
PGSC0003DMT400079099 Potato cytosol 34.62 46.39
PGSC0003DMT400027952 Potato cytosol 33.85 46.32
PGSC0003DMT400027954 Potato cytosol, plastid 36.15 46.08
PGSC0003DMT400029596 Potato cytosol 36.15 46.08
PGSC0003DMT400027948 Potato cytosol, plastid 36.15 46.08
PGSC0003DMT400041378 Potato cytosol, plastid 36.15 46.08
PGSC0003DMT400046079 Potato cytosol 45.38 45.74
CDX69609 Canola cytosol 35.38 45.54
PGSC0003DMT400027951 Potato cytosol, plastid 35.38 45.1
PGSC0003DMT400027947 Potato cytosol, plastid 35.38 45.1
PGSC0003DMT400077393 Potato cytosol 34.62 43.69
PGSC0003DMT400029673 Potato cytosol 35.38 43.4
PGSC0003DMT400042707 Potato cytosol 33.85 43.14
PGSC0003DMT400077394 Potato cytosol 33.08 41.35
CDY58422 Canola cytosol 46.92 36.31
PGSC0003DMT400013650 Potato cytosol 31.54 13.9
Protein Annotations
EntrezGene:107058200MapMan:18.8.2Gene3D:3.40.30.10GO:GO:0003674GO:GO:0003824GO:GO:0005575
GO:GO:0005623GO:GO:0006091GO:GO:0008150GO:GO:0008152GO:GO:0009055GO:GO:0009987
GO:GO:0015035GO:GO:0019725GO:GO:0022900GO:GO:0045454GO:GO:0055114InterPro:GlrX-like_pln_2
InterPro:GlutaredoxinInterPro:IPR002109UniProt:M1A2U1PFAM:PF00462EnsemblPlantsGene:PGSC0003DMG400005239PGSC:PGSC0003DMG400005239
EnsemblPlants:PGSC0003DMT400013430PFscan:PS51354PANTHER:PTHR10168PANTHER:PTHR10168:SF62SUPFAM:SSF52833TIGRFAMs:TIGR02189
InterPro:Thioredoxin-like_sfUniParc:UPI0002958ACBRefSeq:XP_015159097.1SEG:seg::
Description
Glutaredoxin [Source:PGSC_GENE;Acc:PGSC0003DMG400005239]
Coordinates
chr1:+:8757893..8758382
Molecular Weight (calculated)
14146.3 Da
IEP (calculated)
8.502
GRAVY (calculated)
0.062
Length
130 amino acids
Sequence
(BLAST)
001: MQYQESNSFR GNHRTTKVKQ RSSCSDSLER VVKLASVSAV VIFSSSSCCM CHAMKRLFCE LGVNPTVYEL DHDPNGKSME KALSKLLGNS PAIPVVFIGG
101: ELIGSMDRVM ASHISGSLVP LLKEVGALWL
Best Arabidopsis Sequence Match ( AT5G14070.1 )
(BLAST)
001: MQYKTETRGS LSYNNNSKVM NNMNVFPSET LAKIESMAAE NAVVIFSVST CCMCHAIKRL FRGMGVSPAV HELDLLPYGV EIHRALLRLL GCSSGGATSP
101: GALPVVFIGG KMVGAMERVM ASHINGSLVP LLKDAGALWL
Arabidopsis Description
GRXC8Glutaredoxin-C8 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF89]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.