Factsheet for Solyc01g009890.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

plastid 4
vacuole 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008730.2.1
Solyc03g118540.2.1
Solyc04g072460.2.1
Solyc05g009660.2.1
Solyc05g040050.1.1
Solyc06g065650.2.1
Solyc06g068930.1.1
Solyc07g047690.1.1
Solyc11g064950.1.1
Solyc12g056860.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02000.1	Solyc04g072460.2.1	AT1G22070.1	19218396
AT3G02000.1	Solyc12g056860.1.1	AT1G22070.1	19218396
AT3G02000.1	Solyc05g009660.2.1	AT1G68640.1	19218396
AT3G02000.1	Solyc04g072460.2.1	AT1G77920.1	19218396
AT3G02000.1	Solyc12g056860.1.1	AT1G77920.1	19218396
AT3G02000.1	Solyc01g008730.2.1	AT5G06960.1	19218396
AT3G02000.1	Solyc11g064950.1.1	AT5G06960.1	19218396
AT5G14070.1	Solyc05g040050.1.1	AT2G05230.1	21798944
AT5G14070.1	Solyc07g047690.1.1	AT2G05230.1	21798944
AT5G14070.1	Solyc05g040050.1.1	AT2G05250.1	21798944
AT5G14070.1	Solyc07g047690.1.1	AT2G05250.1	21798944
AT5G14070.1	Solyc03g118540.2.1	AT3G17860.1	21798944
AT5G14070.1	Solyc06g068930.1.1	AT3G17860.1	21798944
AT5G14070.1	Solyc06g065650.2.1	AT4G32570.1	21798944
AT5G14070.1	Solyc01g008730.2.1	AT5G06960.1	21798944
AT5G14070.1	Solyc11g064950.1.1	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013430	Potato	cytosol	95.38	95.38
Solyc01g009910.1.1	Tomato	mitochondrion, plastid	76.15	82.5
Solyc01g009900.2.1	Tomato	cytosol, plastid	75.38	81.67
Solyc05g015910.1.1	Tomato	cytosol	73.08	72.52
Solyc01g067440.2.1	Tomato	cytosol	50.77	64.71
KRH70543	Soybean	cytosol	63.08	61.65
GSMUA_Achr10P...	Banana	cytosol	63.85	61.48
KRG94592	Soybean	plastid	62.31	61.36
KRH06898	Soybean	plastid	63.08	61.19
EES05136	Sorghum	cytosol	60.0	60.47
Zm00001d016593_P001	Maize	cytosol	60.0	60.0
HORVU0Hr1G003840.1	Barley	extracellular	60.77	58.96
KRH01571	Soybean	cytosol	63.85	58.45
GSMUA_Achr6P23860_001	Banana	plastid	60.77	58.09
GSMUA_Achr3P18710_001	Banana	cytosol	59.23	57.89
TraesCS2D01G284300.1	Wheat	cytosol, extracellular	59.23	57.46
TraesCS2B01G302700.1	Wheat	cytosol, extracellular	59.23	57.46
TraesCS2A01G285600.1	Wheat	cytosol, extracellular	59.23	57.46
Os04t0393500-01	Rice	cytosol	59.23	57.04
VIT_01s0146g00220.t01	Wine grape	cytosol	67.69	56.41
Os02t0512400-01	Rice	cytosol	58.46	56.3
EES10652	Sorghum	cytosol	59.23	56.2
Zm00001d003927_P001	Maize	cytosol	58.46	55.47
GSMUA_AchrUn_...	Banana	cytosol	55.38	55.38
Solyc01g067460.1.1	Tomato	cytosol	42.31	53.92
CDX91918	Canola	cytosol	54.62	52.99
Solyc09g074590.1.1	Tomato	cytosol	41.54	52.94
AT3G02000.1	Thale cress	cytosol	55.38	52.94
Solyc09g074600.1.1	Tomato	cytosol	40.77	51.96
Bra000980.1-P	Field mustard	cytosol	54.62	51.82
CDX74327	Canola	cytosol	54.62	51.82
Bra006236.1-P	Field mustard	cytosol	53.85	51.47
CDX78558	Canola	cytosol	53.85	51.09
Solyc04g011790.1.1	Tomato	cytosol, plastid	40.0	50.98
Bra008782.1-P	Field mustard	cytosol	52.31	50.75
Bra023448.1-P	Field mustard	cytosol	53.08	50.37
CDX85614	Canola	cytosol	53.08	50.37
CDX70540	Canola	cytosol	53.08	50.37
Solyc04g011830.1.1	Tomato	cytosol, plastid	39.23	50.0
Solyc04g011850.1.1	Tomato	cytosol	38.46	49.02
Solyc04g011870.1.1	Tomato	cytosol, plastid	38.46	49.02
CDX91084	Canola	cytosol	51.54	48.91
Solyc06g008760.1.1	Tomato	cytosol	37.69	48.51
Solyc06g008750.1.1	Tomato	cytosol	37.69	48.04
Solyc09g074580.1.1	Tomato	cytosol	37.69	48.04
Solyc04g011840.1.1	Tomato	cytosol	37.69	48.04
AT5G14070.1	Thale cress	cytosol	51.54	47.86
Solyc08g036570.1.1	Tomato	cytosol	46.15	47.62
Solyc04g011820.1.1	Tomato	cytosol	34.62	47.37
Solyc04g011780.1.1	Tomato	extracellular	36.92	47.06
Solyc04g011860.1.1	Tomato	cytosol, plastid	36.92	47.06
Solyc04g011810.1.1	Tomato	cytosol, plastid	36.92	47.06
Solyc04g011880.1.1	Tomato	cytosol, plastid	36.15	46.08
Solyc04g011800.1.1	Tomato	cytosol, plastid	36.15	46.08
Solyc05g051730.1.1	Tomato	cytosol	36.15	45.63
Solyc06g054570.1.1	Tomato	cytosol	36.15	45.63
CDX69609	Canola	cytosol	35.38	45.54
Solyc04g053110.1.1	Tomato	cytosol	34.62	44.12
Solyc09g074570.1.1	Tomato	cytosol	34.62	42.45
Solyc05g051720.1.1	Tomato	cytosol	33.85	42.31
CDY58422	Canola	cytosol	46.15	35.71

Protein Annotations

MapMan:18.8.2	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035
GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:GlrX-like_pln_2	InterPro:Glutaredoxin
InterPro:IPR002109	UniProt:K4ATI4	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF62
SUPFAM:SSF52833	EnsemblPlantsGene:Solyc01g009890.1	EnsemblPlants:Solyc01g009890.1.1	TIGRFAMs:TIGR02189	InterPro:Thioredoxin-like_sf	UniParc:UPI00027618EF
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:4424607..4424999

Molecular Weight (calculated)

14185.3 Da

IEP (calculated)

8.775

GRAVY (calculated)

-0.004

Length

130 amino acids

Sequence
(BLAST)

001: MQYQESNSSR GNHRTTRVKR RSSCSDSLER VVKLASVSAV VIFSSSSCCM CHAMKRLFCE LGVNPTVYEL DHDPNGKSME KALSKLLGNS PAVPVVFIGS
101: ELIGSMDRVM ASHINGSLVP LLKEVGALWL

Best Arabidopsis Sequence Match ( AT5G14070.1 )
(BLAST)

001: MQYKTETRGS LSYNNNSKVM NNMNVFPSET LAKIESMAAE NAVVIFSVST CCMCHAIKRL FRGMGVSPAV HELDLLPYGV EIHRALLRLL GCSSGGATSP
101: GALPVVFIGG KMVGAMERVM ASHINGSLVP LLKDAGALWL

Arabidopsis Description

GRXC8Glutaredoxin-C8 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF89]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.