Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX87494
CDX88399
CDX95999
CDY05010
CDY14061
CDY21336
CDY38253
CDY38608
CDY38843
CDY41495

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G02000.1 CDY21336 AT1G22070.1 19218396
AT3G02000.1 CDY38253 AT1G22070.1 19218396
AT3G02000.1 CDY38843 AT1G22070.1 19218396
AT3G02000.1 CDY41495 AT1G22070.1 19218396
AT3G02000.1 CDX95999 AT1G68640.1 19218396
AT3G02000.1 CDY38608 AT1G68640.1 19218396
AT3G02000.1 CDX87494 AT1G77920.1 19218396
AT3G02000.1 CDX88399 AT1G77920.1 19218396
AT3G02000.1 CDY05010 AT5G06960.1 19218396
AT3G02000.1 CDY14061 AT5G06960.1 19218396
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra000980.1-P Field mustard cytosol 98.51 96.35
CDX74327 Canola cytosol 98.51 96.35
AT3G02000.1 Thale cress cytosol 91.04 89.71
CDX78558 Canola cytosol 76.87 75.18
CDX70540 Canola cytosol 73.88 72.26
CDX85614 Canola cytosol 73.13 71.53
CDX91084 Canola cytosol 71.64 70.07
EES05136 Sorghum cytosol 61.19 63.57
CDX69609 Canola cytosol 47.01 62.38
Os04t0393500-01 Rice cytosol 62.69 62.22
TraesCS2A01G285600.1 Wheat cytosol, extracellular 61.94 61.94
HORVU0Hr1G003840.1 Barley extracellular 61.94 61.94
Zm00001d016593_P001 Maize cytosol 59.7 61.54
GSMUA_AchrUn_... Banana cytosol 59.7 61.54
TraesCS2D01G284300.1 Wheat cytosol, extracellular 61.19 61.19
TraesCS2B01G302700.1 Wheat cytosol, extracellular 61.19 61.19
GSMUA_Achr10P... Banana cytosol 61.19 60.74
GSMUA_Achr6P23860_001 Banana plastid 61.19 60.29
GSMUA_Achr3P18710_001 Banana cytosol 59.7 60.15
PGSC0003DMT400013427 Potato mitochondrion, plastid 53.73 60.0
CDY32430 Canola cytosol, plastid 45.52 59.8
Os02t0512400-01 Rice cytosol 59.7 59.26
PGSC0003DMT400013435 Potato cytosol, plastid 52.99 59.17
EES10652 Sorghum cytosol 60.45 59.12
KRG94592 Soybean plastid 58.21 59.09
Solyc05g015910.1.1 Tomato cytosol 57.46 58.78
Zm00001d003927_P001 Maize cytosol 59.7 58.39
Solyc01g009910.1.1 Tomato mitochondrion, plastid 52.24 58.33
Solyc01g009900.2.1 Tomato cytosol, plastid 52.24 58.33
KRH06898 Soybean plastid 58.21 58.21
CDY48890 Canola cytosol, plastid 44.03 57.84
PGSC0003DMT400006076 Potato plastid 55.97 55.97
CDY48891 Canola cytosol 42.54 55.88
CDY32431 Canola cytosol 42.54 55.88
KRH70543 Soybean cytosol 55.22 55.64
CDY37292 Canola cytosol, plastid 41.79 54.9
CDY19270 Canola cytosol, plastid 41.79 54.9
Solyc01g009890.1.1 Tomato cytosol, plastid 52.99 54.62
PGSC0003DMT400013430 Potato cytosol 52.99 54.62
CDY68328 Canola cytosol 41.04 53.92
CDY66333 Canola cytosol 41.04 53.92
CDX92597 Canola cytosol 40.3 52.94
CDY13904 Canola cytosol 40.3 52.94
CDX70828 Canola cytosol 40.3 52.94
CDY02610 Canola cytosol 40.3 52.94
CDY66332 Canola cytosol 39.55 51.96
CDX88929 Canola cytosol 39.55 51.96
KRH01571 Soybean cytosol 54.48 51.41
CDX90576 Canola cytosol 38.81 50.98
CDY09747 Canola cytosol 38.81 50.98
CDY54296 Canola cytosol 38.81 50.98
CDY22746 Canola cytosol 38.06 50.0
CDY09079 Canola cytosol 38.06 50.0
CDY53023 Canola cytosol 38.06 49.51
VIT_01s0146g00220.t01 Wine grape cytosol 57.46 49.36
CDY54294 Canola cytosol 37.31 49.02
CDX80138 Canola cytosol 37.31 48.54
CDY22745 Canola cytosol, extracellular 36.57 48.51
CDY09078 Canola cytosol, extracellular 36.57 48.51
CDY58422 Canola cytosol 59.7 47.62
CDX89161 Canola cytosol 36.57 47.57
CDY54881 Canola cytosol 35.07 47.47
CDY09953 Canola cytosol 35.07 47.47
CDY06230 Canola cytosol 35.07 47.47
CDX76677 Canola cytosol 35.82 46.6
CDY11464 Canola cytosol 35.82 46.6
CDY11465 Canola cytosol 35.82 46.6
CDY10229 Canola cytosol 34.33 46.46
CDY69190 Canola cytosol 35.82 46.15
CDY52638 Canola cytosol 35.07 46.08
CDY29666 Canola cytosol 35.07 46.08
CDY23990 Canola cytosol 35.07 46.08
CDX95739 Canola cytosol 34.33 45.1
CDX97824 Canola cytosol 34.33 45.1
CDY10745 Canola cytosol 34.33 45.1
CDX84825 Canola cytosol 34.33 45.1
CDY53024 Canola cytosol 33.58 44.12
CDX80139 Canola cytosol 33.58 44.12
CDY25124 Canola cytosol 32.84 43.14
CDX93949 Canola cytosol 32.84 43.14
CDX89159 Canola cytosol 32.84 43.14
CDY55528 Canola cytosol 33.58 42.86
CDY11466 Canola cytosol 32.09 42.16
CDX76678 Canola cytosol 32.09 42.16
CDX67910 Canola cytosol 32.09 42.16
CDY27469 Canola cytosol 32.84 41.9
CDX89162 Canola cytosol 31.34 41.18
CDY18141 Canola cytosol 31.34 41.18
CDY11462 Canola cytosol 31.34 41.18
CDX76675 Canola cytosol 31.34 41.18
CDY68061 Canola cytosol 31.34 41.18
CDX89921 Canola cytosol 30.6 40.2
CDY32493 Canola cytosol 30.6 40.2
CDX97821 Canola mitochondrion 28.36 28.57
CDY71728 Canola cytosol 27.61 26.06
Protein Annotations
MapMan:18.8.2Gene3D:3.40.30.10GO:A0A078DXD4EnsemblPlants:CDX91918ProteinID:CDX91918ProteinID:CDX91918.1
GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005623GO:GO:0008150GO:GO:0009055
GO:GO:0009987GO:GO:0015035GO:GO:0019725GO:GO:0045454EnsemblPlantsGene:GSBRNA2T00153550001InterPro:GlrX-like_pln_2
InterPro:GlutaredoxinInterPro:IPR002109PFAM:PF00462PFscan:PS51354PANTHER:PTHR10168PANTHER:PTHR10168:SF128
SUPFAM:SSF52833TIGRFAMs:TIGR02189InterPro:Thioredoxin-like_sfUniParc:UPI0004EE03B7::
Description
BnaC03g32200D
Coordinates
chrLK031870:+:840982..841386
Molecular Weight (calculated)
13929.0 Da
IEP (calculated)
6.329
GRAVY (calculated)
0.536
Length
134 amino acids
Sequence
(BLAST)
001: MQYQTESWGS YNLGFGGDVG LAADTSLLRL ESLVAESAVV IFSVSTCCMC HAVKGLFRGM GVSPAVHELD LHPYGGDIQR ALIHLLGCSG ASSPGALPVV
101: FIGGKLVGAM DRVMASHING SLVPLLKDAG ALWL
Best Arabidopsis Sequence Match ( AT3G02000.1 )
(BLAST)
001: MQYQTESWGS YKMSSLGFGG LGMVADTGLL RIESLASESA VVIFSVSTCC MCHAVKGLFR GMGVSPAVHE LDLHPYGGDI QRALIRLLGC SGSSSPGSLP
101: VVFIGGKLVG AMDRVMASHI NGSLVPLLKD AGALWL
Arabidopsis Description
GRXC7ROXY1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBU2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.