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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX74327
CDX91918

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G68640.1 CDX74327 AT3G02000.1 19218396
AT1G68640.1 CDX91918 AT3G02000.1 19218396
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX95999 Canola nucleus 98.42 98.42
Bra004329.1-P Field mustard nucleus 98.19 98.41
AT1G68640.1 Thale cress nucleus 91.18 89.16
Os10t0566200-00 Rice extracellular 16.97 63.56
CDY08443 Canola nucleus 47.51 63.44
VIT_01s0011g03230.t01 Wine grape nucleus 64.25 62.69
CDX73830 Canola nucleus 46.38 61.93
CDY00762 Canola nucleus 46.38 61.93
CDY50562 Canola nucleus 46.61 61.68
CDY52616 Canola nucleus 46.38 61.56
CDY05010 Canola nucleus 45.25 61.35
CDX98971 Canola nucleus 45.48 61.28
CDX70053 Canola nucleus 45.25 61.16
CDY14061 Canola nucleus 45.02 61.04
Os06t0265400-01 Rice nucleus 51.81 59.48
KRH35977 Soybean nucleus 59.28 57.46
KRG90784 Soybean nucleus 58.82 57.14
GSMUA_Achr9P15550_001 Banana nucleus 55.43 57.11
Solyc05g009660.2.1 Tomato nucleus 61.99 56.61
PGSC0003DMT400033741 Potato nucleus 61.54 56.31
HORVU7Hr1G042180.5 Barley nucleus 47.74 55.97
KRH70569 Soybean nucleus 57.92 54.82
CDY42138 Canola nucleus 40.05 54.63
Os01t0882200-00 Rice cytosol, extracellular 17.42 54.23
KRH75411 Soybean nucleus 58.37 53.09
TraesCS7A01G207100.1 Wheat nucleus 52.71 52.6
TraesCS7D01G209800.1 Wheat nucleus 52.71 52.01
TraesCS7B01G114300.1 Wheat nucleus 52.49 51.79
Zm00001d037316_P008 Maize cytosol, nucleus, peroxisome, plastid 37.56 48.97
Zm00001d037317_P003 Maize nucleus 47.74 48.84
CDX85782 Canola nucleus 37.78 46.13
OQU76203 Sorghum nucleus 48.19 46.1
CDY40074 Canola nucleus 37.56 45.86
CDY71150 Canola nucleus, plastid 20.14 44.95
CDX69866 Canola nucleus 36.88 44.78
CDY08810 Canola nucleus 37.1 44.69
CDY70396 Canola mitochondrion 21.04 44.5
CDY14552 Canola nucleus 36.88 44.41
CDY21625 Canola nucleus 36.2 43.96
CDX68037 Canola nucleus 36.88 43.94
CDY33975 Canola nucleus 36.2 43.24
CDY37811 Canola nucleus 36.2 43.24
CDY41495 Canola nucleus 35.75 42.82
CDY38843 Canola nucleus 35.52 42.43
CDY38253 Canola nucleus 36.43 41.82
CDY18683 Canola cytosol 34.16 40.59
CDX81273 Canola nucleus 35.52 40.36
CDY22689 Canola nucleus 38.46 39.72
CDY70714 Canola nucleus 31.0 38.92
CDY21336 Canola nucleus 36.65 38.76
CDX88399 Canola nucleus 37.1 38.14
CDX87494 Canola nucleus 38.01 37.84
CDX70061 Canola nucleus 38.46 37.69
CDX98963 Canola nucleus 38.24 37.47
CDY70235 Canola nucleus 30.77 37.36
CDX93571 Canola nucleus 40.27 37.24
CDX95068 Canola nucleus 40.27 37.24
CDY06309 Canola nucleus 40.05 36.57
CDY00417 Canola mitochondrion 14.03 26.72
CDX79240 Canola nucleus 32.35 25.09
Protein Annotations
Gene3D:1.20.5.170MapMan:15.5.4.1MapMan:15.5.4.7.1MapMan:26.8.3.1.2GO:A0A078HPA7UniProt:A0A078HPA7
EnsemblPlants:CDY38608ProteinID:CDY38608ProteinID:CDY38608.1ncoils:CoilGO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0006139GO:GO:0006351GO:GO:0006355
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0043565EnsemblPlantsGene:GSBRNA2T00066295001
InterPro:IPR004827InterPro:IPR025422PFAM:PF00170PFAM:PF14144ScanProsite:PS00036PFscan:PS50217
PFscan:PS51806PANTHER:PTHR22952PANTHER:PTHR22952:SF372SMART:SM00338SUPFAM:SSF57959InterPro:TGA_domain
UniParc:UPI0004EF2817InterPro:bZIPSEG:seg:::
Description
BnaC06g30310DBnaC06g30310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HPA7]
Coordinates
chrLK032427:-:242725..245473
Molecular Weight (calculated)
49768.8 Da
IEP (calculated)
6.118
GRAVY (calculated)
-0.473
Length
442 amino acids
Sequence
(BLAST)
001: MQSSFKTVPF NPDFYSQASF FFRGDSCLDE FHQPINGFHH DEAVGLSPNV TVAASNNLHY TTFDTVMDYG MRERLEGEDE CLDTGELMYQ RGTRLVGGGG
101: GEVNSSLDKW CDSVSAMADN SQHTDTSTDI DTDDKSQLNG VHQGMLLATN CSDQSKTLRR LAQNREAARK SRLRKKAYVQ QLENSRIRLA QLEEELKRAR
201: QQGCSSERGV SRENTHVAAG NGVFSFELEY ARWMEEHQRL INDLRAGVHS QLGDNELRVL VDAVMSHYDE IFRLKGIGTK VDVFHMLSGM WQTPAERFFM
301: WLGGFRSSEL LKILGNHVDP LTDQQLIGIC NLQQSSQQAE DALSQGMEAL QQSLLETLSS ASMGPNSSAN VADYMGHMAM AMGKLGTLEN FLRQADLLRQ
401: QTLQQLHRIL TTRQAARAFL VIHDYICRLR ALSSLWLARP RD
Best Arabidopsis Sequence Match ( AT1G68640.1 )
(BLAST)
001: MQSSFKTVPF TPDFYSQSSY FFRGDSCLEE FHQPVNGFHH EEAIDLSPNV TIASANLHYT TFDTVMDCGG GGGGGLRERL EGGEEECLDT GQLVYQKGTR
101: LVGGGVGEVN SSWCDSVSAM ADNSQHTDTS TDIDTDDKTQ LNGGHQGMLL ATNCSDQSNV KSSDQRTLRR LAQNREAARK SRLRKKAYVQ QLENSRIRLA
201: QLEEELKRAR QQGSLVERGV SADHTHLAAG NGVFSFELEY TRWKEEHQRM INDLRSGVNS QLGDNDLRVL VDAVMSHYDE IFRLKGIGTK VDVFHMLSGM
301: WKTPAERFFM WLGGFRSSEL LKILGNHVDP LTDQQLIGIC NLQQSSQQAE DALSQGMEAL QQSLLETLSS ASMGPNSSAN VADYMGHMAM AMGKLGTLEN
401: FLRQADLLRQ QTLQQLHRIL TTRQAARAFL VIHDYISRLR ALSSLWLARP RD
Arabidopsis Description
PANTranscription factor PERIANTHIA [Source:UniProtKB/Swiss-Prot;Acc:Q9SX27]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.