Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87494 | Canola | nucleus | 95.58 | 92.57 |
| AT1G77920.1 | Thale cress | nucleus | 75.35 | 88.04 |
| CDX68037 | Canola | nucleus | 74.19 | 85.98 |
| CDY38253 | Canola | nucleus | 65.81 | 73.51 |
| CDY41495 | Canola | nucleus | 61.86 | 72.09 |
| CDY38843 | Canola | nucleus | 61.63 | 71.62 |
| CDY21336 | Canola | nucleus | 67.67 | 69.62 |
| VIT_18s0001g04470.t01 | Wine grape | nucleus | 55.81 | 66.12 |
| GSMUA_Achr5P16630_001 | Banana | nucleus | 51.86 | 61.1 |
| Solyc04g072460.2.1 | Tomato | nucleus | 49.77 | 59.28 |
| PGSC0003DMT400070884 | Potato | nucleus | 49.77 | 59.28 |
| Solyc12g056860.1.1 | Tomato | nucleus | 47.91 | 59.2 |
| PGSC0003DMT400043651 | Potato | nucleus | 49.53 | 59.0 |
| CDY08810 | Canola | nucleus | 49.3 | 57.77 |
| GSMUA_AchrUn_... | Banana | nucleus | 47.44 | 57.63 |
| CDY14552 | Canola | nucleus | 49.07 | 57.49 |
| KRH63045 | Soybean | cytosol | 12.56 | 57.45 |
| GSMUA_Achr10P... | Banana | nucleus | 46.05 | 56.41 |
| CDX85782 | Canola | nucleus | 47.21 | 56.08 |
| CDY33975 | Canola | nucleus | 48.14 | 55.95 |
| CDY40074 | Canola | nucleus | 46.74 | 55.52 |
| CDY37811 | Canola | nucleus | 47.67 | 55.41 |
| KRH53141 | Soybean | nucleus | 45.35 | 54.93 |
| CDY08443 | Canola | nucleus | 41.86 | 54.38 |
| KRH16629 | Soybean | nucleus | 46.74 | 54.32 |
| KRH18838 | Soybean | nucleus | 46.74 | 54.32 |
| CDY18683 | Canola | cytosol | 46.74 | 54.03 |
| CDX69866 | Canola | nucleus | 45.58 | 53.85 |
| KRH64780 | Soybean | nucleus | 45.12 | 53.59 |
| CDY14061 | Canola | nucleus | 40.47 | 53.37 |
| CDY05010 | Canola | nucleus | 40.47 | 53.37 |
| CDX73830 | Canola | nucleus | 40.93 | 53.17 |
| CDY00762 | Canola | nucleus | 40.93 | 53.17 |
| CDY50562 | Canola | nucleus | 41.16 | 52.99 |
| CDY52616 | Canola | nucleus | 40.93 | 52.85 |
| CDX81273 | Canola | nucleus | 47.67 | 52.7 |
| CDX98971 | Canola | nucleus | 40.0 | 52.44 |
| CDX70053 | Canola | nucleus | 39.77 | 52.29 |
| Zm00001d016312_P001 | Maize | cytosol | 11.16 | 51.61 |
| CDY21625 | Canola | nucleus | 43.49 | 51.37 |
| CDX79240 | Canola | nucleus | 67.21 | 50.7 |
| Os04t0637000-01 | Rice | nucleus | 43.95 | 47.61 |
| KXG27222 | Sorghum | nucleus | 43.95 | 46.32 |
| CDY42138 | Canola | nucleus | 34.19 | 45.37 |
| CDY71150 | Canola | nucleus, plastid | 20.23 | 43.94 |
| Zm00001d026398_P006 | Maize | nucleus | 42.09 | 43.93 |
| TraesCS2A01G526300.1 | Wheat | nucleus | 42.33 | 43.44 |
| CDY70396 | Canola | mitochondrion | 20.93 | 43.06 |
| TraesCS2D01G529000.1 | Wheat | nucleus | 42.33 | 42.82 |
| TraesCS2B01G556600.1 | Wheat | nucleus | 43.26 | 42.76 |
| Zm00001d024160_P003 | Maize | nucleus | 40.93 | 41.51 |
| KXG38496 | Sorghum | nucleus | 29.53 | 40.84 |
| Zm00001d002143_P002 | Maize | cytosol | 40.7 | 39.86 |
| CDY70714 | Canola | nucleus | 31.63 | 38.64 |
| CDY22689 | Canola | nucleus | 37.91 | 38.08 |
| CDX95999 | Canola | nucleus | 38.37 | 37.33 |
| CDY38608 | Canola | nucleus | 38.14 | 37.1 |
| CDY70235 | Canola | nucleus | 31.16 | 36.81 |
| CDX70061 | Canola | nucleus | 38.37 | 36.59 |
| Zm00001d041428_P001 | Maize | cytosol | 13.26 | 36.54 |
| CDX98963 | Canola | nucleus | 38.14 | 36.36 |
| CDY00417 | Canola | mitochondrion | 19.07 | 35.34 |
| CDY06309 | Canola | nucleus | 39.53 | 35.12 |
| Os08t0176900-01 | Rice | nucleus | 31.63 | 34.96 |
| CDX95068 | Canola | nucleus | 38.84 | 34.94 |
| CDX93571 | Canola | nucleus | 38.6 | 34.73 |
| OQU79985 | Sorghum | golgi, vacuole | 40.93 | 34.11 |
| HORVU2Hr1G116090.2 | Barley | cytosol | 27.67 | 28.13 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | MapMan:15.5.4.7.1 | GO:A0A078DIP3 | EnsemblPlants:CDX88399 | ProteinID:CDX88399 |
| ProteinID:CDX88399.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00147931001 | InterPro:IPR004827 | InterPro:IPR025422 |
| PFAM:PF00170 | PFAM:PF14144 | ScanProsite:PS00036 | PFscan:PS50217 | PFscan:PS51806 | PANTHER:PTHR22952 |
| PANTHER:PTHR22952:SF180 | SMART:SM00338 | SUPFAM:SSF57959 | InterPro:TGA_domain | UniParc:UPI0004EE0E3A | InterPro:bZIP |
| SEG:seg | : | : | : | : | : |
Description
BnaC06g38430D
Coordinates
chrLK031855:+:771425..776664
Molecular Weight (calculated)
49305.5 Da
IEP (calculated)
7.015
GRAVY (calculated)
-0.559
Length
430 amino acids
Sequence
(BLAST)
(BLAST)
001: MLHPVSSSLR KKVEALQEFL VADIIWCVLN RYKRTTRSPF GSVKEALISK QNKEEMMSSF SPTQLASLRD MGIYEPFQQL VSWGNVYKSD INDHSPNTAS
101: SSVIQVDARI DDHNNIVKSN YASTSHNHIE AEPSSNDHQD VDDDDDDRIH DKMKRRLAQN REAARKSRLR RKAYVQQLEE SRLKLSQLEQ ELEKAKQQGL
201: RVSNSIPSGS ITNARIATFE MEHSHWLEEQ SRRVSELRIA LQAHISDIEL RMLVESCLNH YANLFRMKSD AAKADVFYLI SGMWRTSTER FFQWIGGFRP
301: SELLNVVMPY LQPLTDQQVL EVRNLQQSSQ QAEEALSQGI EKLQQSLVEN IVVDAFSMDY PPQMAAALEN LQALEGFVNQ ADHLRQQTLQ QMAKILTTRQ
401: SARGLLALGE YLHRLRALSS LWAARPREPT
101: SSVIQVDARI DDHNNIVKSN YASTSHNHIE AEPSSNDHQD VDDDDDDRIH DKMKRRLAQN REAARKSRLR RKAYVQQLEE SRLKLSQLEQ ELEKAKQQGL
201: RVSNSIPSGS ITNARIATFE MEHSHWLEEQ SRRVSELRIA LQAHISDIEL RMLVESCLNH YANLFRMKSD AAKADVFYLI SGMWRTSTER FFQWIGGFRP
301: SELLNVVMPY LQPLTDQQVL EVRNLQQSSQ QAEEALSQGI EKLQQSLVEN IVVDAFSMDY PPQMAAALEN LQALEGFVNQ ADHLRQQTLQ QMAKILTTRQ
401: SARGLLALGE YLHRLRALSS LWAARPREPT
001: MMSSSSPTQL ASLRDMGIYE PFQQIVGWGN VFKSDINDHS PNTATSSIIQ VDPRIDDHNN NIKINYDSSH NQIEAEQPSS NDNQDDDGRI HDKMKRRLAQ
101: NREAARKSRL RKKAYVQQLE ESRLKLSQLE QELEKVKQQG HLGPSGSINT GIASFEMEYS HWLQEQSRRV SELRTALQSH ISDIELKMLV ESCLNHYANL
201: FQMKSDAAKA DVFYLISGMW RTSTERFFQW IGGFRPSELL NVVMPYLQPL TDQQILEVRN LQQSSQQAED ALSQGIDKLQ QSLAESIVID AVIESTHYPT
301: HMAAAIENLQ ALEGFVNQAD HLRQQTLQQM AKILTTRQSA RGLLALGEYL HRLRALSSLW AARPQEPT
101: NREAARKSRL RKKAYVQQLE ESRLKLSQLE QELEKVKQQG HLGPSGSINT GIASFEMEYS HWLQEQSRRV SELRTALQSH ISDIELKMLV ESCLNHYANL
201: FQMKSDAAKA DVFYLISGMW RTSTERFFQW IGGFRPSELL NVVMPYLQPL TDQQILEVRN LQQSSQQAED ALSQGIDKLQ QSLAESIVID AVIESTHYPT
301: HMAAAIENLQ ALEGFVNQAD HLRQQTLQQM AKILTTRQSA RGLLALGEYL HRLRALSSLW AARPQEPT
Arabidopsis Description
TGA7Transcription factor TGA7 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZE2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.