Factsheet for PGSC0003DMT400070884

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006076
PGSC0003DMT400013427
PGSC0003DMT400013430
PGSC0003DMT400013435

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22070.1	PGSC0003DMT400006076	AT3G02000.1	19218396
AT1G22070.1	PGSC0003DMT400013427	AT3G02000.1	19218396
AT1G22070.1	PGSC0003DMT400013430	AT3G02000.1	19218396
AT1G22070.1	PGSC0003DMT400013435	AT3G02000.1	19218396
AT1G77920.1	PGSC0003DMT400006076	AT3G02000.1	19218396
AT1G77920.1	PGSC0003DMT400013427	AT3G02000.1	19218396
AT1G77920.1	PGSC0003DMT400013430	AT3G02000.1	19218396
AT1G77920.1	PGSC0003DMT400013435	AT3G02000.1	19218396

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g072460.2.1	Tomato	nucleus	98.34	98.34
PGSC0003DMT400043651	Potato	nucleus	83.66	83.66
VIT_18s0001g04470.t01	Wine grape	nucleus	66.48	66.12
Bra015646.1-P	Field mustard	nucleus	57.06	60.77
GSMUA_Achr5P16630_001	Banana	nucleus	60.39	59.73
AT1G77920.1	Thale cress	nucleus	60.11	58.97
KRH63045	Soybean	cytosol	15.24	58.51
CDX68037	Canola	nucleus	60.11	58.49
Bra031364.1-P	Field mustard	nucleus	60.66	57.94
Bra016389.1-P	Field mustard	nucleus	58.17	57.07
CDY38843	Canola	nucleus	58.45	57.03
CDY41495	Canola	nucleus	58.17	56.91
GSMUA_AchrUn_...	Banana	nucleus	55.68	56.78
CDY38253	Canola	nucleus	60.39	56.62
KRH53141	Soybean	nucleus	55.68	56.62
AT1G22070.1	Thale cress	nucleus	60.11	56.51
KRH18838	Soybean	nucleus	57.89	56.49
Zm00001d016312_P001	Maize	cytosol	14.4	55.91
GSMUA_Achr10P...	Banana	nucleus	54.02	55.56
KRH16629	Soybean	nucleus	56.79	55.41
KRH64780	Soybean	nucleus	54.29	54.14
PGSC0003DMT400033308	Potato	nucleus	53.19	53.93
PGSC0003DMT400024428	Potato	nucleus	47.37	52.78
CDY21336	Canola	nucleus	60.39	52.15
CDX88399	Canola	nucleus	59.28	49.77
CDX87494	Canola	nucleus	60.11	48.87
Os04t0637000-01	Rice	nucleus	52.63	47.86
PGSC0003DMT400016235	Potato	nucleus	51.52	47.45
KXG27222	Sorghum	nucleus	53.46	47.3
PGSC0003DMT400026710	Potato	mitochondrion	22.99	47.16
Zm00001d026398_P006	Maize	nucleus	52.63	46.12
KXG38496	Sorghum	nucleus	37.4	43.41
PGSC0003DMT400060922	Potato	nucleus	32.13	43.28
TraesCS2D01G529000.1	Wheat	nucleus	49.86	42.35
TraesCS2A01G526300.1	Wheat	nucleus	49.03	42.24
Zm00001d002143_P002	Maize	cytosol	51.25	42.14
TraesCS2B01G556600.1	Wheat	nucleus	50.42	41.84
Zm00001d024160_P003	Maize	nucleus	48.75	41.51
PGSC0003DMT400060926	Potato	nucleus	48.48	40.42
Os08t0176900-01	Rice	nucleus	42.94	39.85
Zm00001d041428_P001	Maize	cytosol	16.62	38.46
PGSC0003DMT400067782	Potato	nucleus	34.9	38.3
PGSC0003DMT400029743	Potato	nucleus, plastid	39.89	37.89
OQU79985	Sorghum	golgi, vacuole	49.86	34.88
PGSC0003DMT400033741	Potato	nucleus	45.71	34.16
CDX79240	Canola	nucleus	52.63	33.33
PGSC0003DMT400060865	Potato	nucleus	41.55	32.54
PGSC0003DMT400018306	Potato	nucleus	43.49	32.17
HORVU2Hr1G116090.2	Barley	cytosol	33.24	28.37

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827
InterPro:IPR025422	UniProt:M1CMW1	PFAM:PF00170	PFAM:PF14144	EnsemblPlantsGene:PGSC0003DMG400027562	PGSC:PGSC0003DMG400027562
EnsemblPlants:PGSC0003DMT400070884	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF180
SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI0002954906	InterPro:bZIP	SEG:seg

Description

Transcription factor TGA7 [Source:PGSC_GENE;Acc:PGSC0003DMG400027562]

Coordinates

chr4:+:62132907..62137088

Molecular Weight (calculated)

40877.9 Da

IEP (calculated)

7.182

GRAVY (calculated)

-0.485

Length

361 amino acids

Sequence
(BLAST)

001: MTSPTTQFAP TRRMGIYEPF HQMSVWEDAF RGDIMPSADA CMVSHPNDRP DDKSGYTSGE QHMPSGSGDN QAPRSSSDKA QRRLAQNREA ARKSRMRKKA
101: YVQQLETSRL KLAQLELELE RARQQGLYML GSNSNMGLLG TINPGIAAFE IEYSQWVEEQ QKKNAELRSI LQSPVSDMEL QLLVENVLSH YFNLFRMKAD
201: AAKADVFYLM SGMWRTSVER FFLWLGGFKP SELINVVMPQ LEPLADQQVI KVCNLRHCCQ QAEDALTQGM DKLQQTLAQS ILNMNTGAGN YTSQMVSSME
301: NLEALESFVN QADHLRQQTL QQMSIILTTH QAARGLLAFG EYVQRLRALS SLWAARPREP T

Best Arabidopsis Sequence Match ( AT5G65210.5 )
(BLAST)

001: MNSTSTHFVP PRRVGIYEPV HQFGMWGESF KSNISNGTMN TPNHIIIPNN QKLDNNVSED TSHGTAGTPH MFDQEASTSR HPDKIQRRLA QNREAARKSR
101: LRKKAYVQQL ETSRLKLIQL EQELDRARQQ GFYVGNGIDT NSLGFSETMN PGIAAFEMEY GHWVEEQNRQ ICELRTVLHG HINDIELRSL VENAMKHYFE
201: LFRMKSSAAK ADVFFVMSGM WRTSAERFFL WIGGFRPSDL LKVLLPHFDV LTDQQLLDVC NLKQSCQQAE DALTQGMEKL QHTLADCVAA GQLGEGSYIP
301: QVNSAMDRLE ALVSFVNQAD HLRHETLQQM YRILTTRQAA RGLLALGEYF QRLRALSSSW ATRHREPT

Arabidopsis Description

TGA1Transcription factor TGA1 [Source:UniProtKB/Swiss-Prot;Acc:Q39237]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.