Factsheet for Bra016389.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000980.1-P
Bra027690.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22070.1	Bra027690.1-P	AT1G64280.1	10659709
AT1G22070.1	Bra027690.1-P	AT1G64280.1	10662863
AT1G22070.1	Bra027690.1-P	AT1G64280.1	15634206
AT1G22070.1	Bra027690.1-P	AT1G64280.1	21798944
AT1G22070.1	Bra000980.1-P	AT3G02000.1	19218396

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41495	Canola	nucleus	98.64	98.37
CDY38843	Canola	nucleus	95.65	95.14
Bra031364.1-P	Field mustard	nucleus	89.67	87.3
AT1G22070.1	Thale cress	nucleus	86.96	83.33
Bra015646.1-P	Field mustard	nucleus	68.21	74.04
VIT_18s0001g04470.t01	Wine grape	nucleus	63.04	63.91
Solyc04g072460.2.1	Tomato	nucleus	57.34	58.45
PGSC0003DMT400070884	Potato	nucleus	57.07	58.17
Solyc12g056860.1.1	Tomato	nucleus	54.62	57.76
KRH63045	Soybean	cytosol	14.67	57.45
PGSC0003DMT400043651	Potato	nucleus	56.25	57.34
Bra024366.1-P	Field mustard	nucleus	57.07	57.22
GSMUA_Achr5P16630_001	Banana	nucleus	56.25	56.71
GSMUA_AchrUn_...	Banana	nucleus	54.08	56.21
Bra031871.1-P	Field mustard	nucleus	56.25	55.95
GSMUA_Achr10P...	Banana	nucleus	52.72	55.27
Bra028604.1-P	Field mustard	nucleus	54.35	55.25
KRH53141	Soybean	nucleus	52.72	54.65
Bra009241.1-P	Field mustard	nucleus	44.57	52.9
KRH64780	Soybean	nucleus	51.9	52.76
KRH18838	Soybean	nucleus	52.99	52.7
Bra009063.1-P	Field mustard	nucleus	51.9	52.47
KRH16629	Soybean	nucleus	52.72	52.43
Bra028713.1-P	Field mustard	nucleus	45.65	51.53
Bra034767.1-P	Field mustard	nucleus	45.65	50.76
Bra037809.1-P	Field mustard	nucleus	53.8	50.51
Bra038705.1-P	Field mustard	nucleus	45.38	50.0
Bra001443.1-P	Field mustard	nucleus	44.84	49.85
Zm00001d016312_P001	Maize	cytosol	11.68	46.24
Os04t0637000-01	Rice	nucleus	48.37	44.84
Bra009233.1-P	Field mustard	cytosol	32.88	43.21
Bra037374.1-P	Field mustard	nucleus	36.41	42.68
KXG27222	Sorghum	nucleus	47.28	42.65
TraesCS2A01G526300.1	Wheat	nucleus	46.74	41.05
TraesCS2D01G529000.1	Wheat	nucleus	47.28	40.94
TraesCS2B01G556600.1	Wheat	nucleus	48.1	40.69
Zm00001d026398_P006	Maize	nucleus	45.11	40.29
KXG38496	Sorghum	nucleus	33.97	40.19
Zm00001d024160_P003	Maize	nucleus	44.84	38.92
Bra031622.1-P	Field mustard	nucleus	44.57	38.32
Zm00001d002143_P002	Maize	cytosol	43.75	36.67
Bra004329.1-P	Field mustard	nucleus	43.21	36.05
Bra018634.1-P	Field mustard	nucleus	45.11	34.95
Zm00001d041428_P001	Maize	cytosol	14.67	34.62
Os08t0176900-01	Rice	nucleus	36.41	34.45
Bra005914.1-P	Field mustard	nucleus	39.13	33.18
OQU79985	Sorghum	golgi, vacuole	45.38	32.36
HORVU2Hr1G116090.2	Barley	cytosol	30.71	26.71

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	EnsemblPlantsGene:Bra016389	EnsemblPlants:Bra016389.1	EnsemblPlants:Bra016389.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827	InterPro:IPR025422	UniProt:M4DIR2	PFAM:PF07716
PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF180
SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI00025465D5	InterPro:bZIP	SEG:seg

Description

AT1G22070 (E=1e-160) TGA3 | TGA3; DNA binding / calmodulin binding / protein binding / transcription factor

Coordinates

chrA08:-:18200966..18202552

Molecular Weight (calculated)

41723.1 Da

IEP (calculated)

7.029

GRAVY (calculated)

-0.642

Length

368 amino acids

Sequence
(BLAST)

001: MSSSSSNTQA VPFRDMAMYE PFQQSTGWDN TFNTITSNNH NNNNQTSSAV ARREADDNNK GNYTSLYNNS VEAEPSSNND QEEVQINDKM KRRLAQNREA
101: ARKSRLRKKA HVQQLEESRL KLSQLEQELV RARQQGLCVT SDATYLGPAG TMNTGIAAFE MEHKHWLEEQ NKRVSEIRTA LQAHISDVEL KMLVDVCLNH
201: YANLFRMKAD AAKADVFFLI SGMWRTSTER FFQWIGGFRP SELLNVVMPY IEPLTDQQLL EVRNLQQSSQ QAEEALSQGL DKLQQGLVEN IAVVESLNHG
301: GAQMASAMEN LESLEGFVNQ ADHLRKQSLQ QMSKVLTTRQ AARGLLALGE YFHRLRALSS LWAARPRN

Best Arabidopsis Sequence Match ( AT1G22070.1 )
(BLAST)

001: MEMMSSSSST TQVVSFRDMG MYEPFQQLSG WESPFKSDIN NITSNQNNNQ SSSTTLEVDA RPEADDNNRV NYTSVYNNSL EAEPSSNNDQ DEDRINDKMK
101: RRLAQNREAA RKSRLRKKAH VQQLEESRLK LSQLEQELVR ARQQGLCVRN SSDTSYLGPA GNMNSGIAAF EMEYTHWLEE QNRRVSEIRT ALQAHIGDIE
201: LKMLVDSCLN HYANLFRMKA DAAKADVFFL MSGMWRTSTE RFFQWIGGFR PSELLNVVMP YVEPLTDQQL LEVRNLQQSS QQAEEALSQG LDKLQQGLVE
301: SIAIQIKVVE SVNHGAPMAS AMENLQALES FVNQADHLRQ QTLQQMSKIL TTRQAARGLL ALGEYFHRLR ALSSLWAARP REHT

Arabidopsis Description

TGA3At1g22070 [Source:UniProtKB/TrEMBL;Acc:Q147Q9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.