CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94592
KRH01571
KRH06898
KRH37416
KRH70543

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22070.1	KRH37416	AT1G64280.1	10659709
AT1G22070.1	KRH37416	AT1G64280.1	10662863
AT1G22070.1	KRH37416	AT1G64280.1	15634206
AT1G22070.1	KRH37416	AT1G64280.1	21798944
AT1G22070.1	KRG94592	AT3G02000.1	19218396
AT1G22070.1	KRH01571	AT3G02000.1	19218396
AT1G22070.1	KRH06898	AT3G02000.1	19218396
AT1G22070.1	KRH70543	AT3G02000.1	19218396
AT1G77920.1	KRH37416	AT1G64280.1	10662863
AT1G77920.1	KRH37416	AT1G64280.1	15634206
AT1G77920.1	KRG94592	AT3G02000.1	19218396
AT1G77920.1	KRH01571	AT3G02000.1	19218396
AT1G77920.1	KRH06898	AT3G02000.1	19218396
AT1G77920.1	KRH70543	AT3G02000.1	19218396

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016312_P001	Maize	cytosol	30.85	31.18
KRH64780	Soybean	nucleus	93.62	24.31
KRH53141	Soybean	nucleus	90.43	23.94
KRH18838	Soybean	nucleus	78.72	20.0
KRH16629	Soybean	nucleus	77.66	19.73
Zm00001d041428_P001	Maize	cytosol	29.79	17.95
KRG92164	Soybean	nucleus	42.55	17.02
Solyc12g056860.1.1	Tomato	nucleus	62.77	16.95
KRH34622	Soybean	cytosol	40.43	16.45
PGSC0003DMT400043651	Potato	nucleus	62.77	16.34
Bra015646.1-P	Field mustard	nucleus	57.45	15.93
Solyc04g072460.2.1	Tomato	nucleus	60.64	15.79
VIT_18s0001g04470.t01	Wine grape	nucleus	60.64	15.7
CDX68037	Canola	nucleus	60.64	15.36
PGSC0003DMT400070884	Potato	nucleus	58.51	15.24
AT1G77920.1	Thale cress	nucleus	59.57	15.22
KRH36324	Soybean	nucleus	53.19	15.06
Bra016389.1-P	Field mustard	nucleus	57.45	14.67
CDY41495	Canola	nucleus	57.45	14.63
GSMUA_Achr5P16630_001	Banana	nucleus	56.38	14.52
CDY38843	Canola	nucleus	56.38	14.32
KRH66777	Soybean	nucleus	43.62	14.14
GSMUA_AchrUn_...	Banana	nucleus	53.19	14.12
AT1G22070.1	Thale cress	nucleus	57.45	14.06
Bra031364.1-P	Field mustard	nucleus	56.38	14.02
GSMUA_Achr10P...	Banana	nucleus	51.06	13.68
KRH59415	Soybean	nucleus	53.19	13.51
CDY38253	Canola	nucleus	55.32	13.51
KRG97639	Soybean	nucleus	51.06	13.26
KRH43266	Soybean	nucleus	53.19	13.19
KRH31239	Soybean	nucleus	50.0	12.91
CDY21336	Canola	nucleus	56.38	12.68
CDX88399	Canola	nucleus	57.45	12.56
KXG38496	Sorghum	nucleus	40.43	12.22
CDX87494	Canola	nucleus	57.45	12.16
KRG93068	Soybean	nucleus	54.26	11.49
Os04t0637000-01	Rice	nucleus	47.87	11.34
Zm00001d026398_P006	Maize	nucleus	47.87	10.92
KRH70569	Soybean	nucleus	54.26	10.92
TraesCS2D01G529000.1	Wheat	nucleus	48.94	10.82
KXG27222	Sorghum	nucleus	46.81	10.78
KRH20680	Soybean	nucleus	53.19	10.66
Zm00001d024160_P003	Maize	nucleus	47.87	10.61
KRH35977	Soybean	nucleus	51.06	10.53
TraesCS2A01G526300.1	Wheat	nucleus	46.81	10.5
KRH75411	Soybean	nucleus	54.26	10.49
TraesCS2B01G556600.1	Wheat	nucleus	47.87	10.34
KRG90784	Soybean	nucleus	48.94	10.11
KRH13334	Soybean	nucleus	53.19	10.06
Zm00001d002143_P002	Maize	cytosol	46.81	10.02
CDX79240	Canola	nucleus	59.57	9.82
KRG95103	Soybean	nucleus	47.87	9.8
KRH66771	Soybean	nucleus	46.81	9.57
HORVU2Hr1G116090.2	Barley	cytosol	42.55	9.46
Os08t0176900-01	Rice	nucleus	38.3	9.25
KRH25227	Soybean	nucleus	48.94	9.18
KRH67029	Soybean	nucleus	47.87	9.16
KRG95350	Soybean	nucleus	47.87	9.16
KRH22685	Soybean	nucleus	46.81	8.98
KRH26635	Soybean	nucleus	45.74	8.81
KRH30432	Soybean	nucleus	45.74	8.72
KRH71904	Soybean	nucleus	44.68	8.68
OQU79985	Sorghum	golgi, vacuole	46.81	8.53
KRH32997	Soybean	nucleus	44.68	8.12
KRH39187	Soybean	cytosol, extracellular, nucleus	3.19	1.69
KRH21813	Soybean	nucleus	2.13	1.24

Protein Annotations

MapMan:15.5.4.7.1	EMBL:ACUP02002591	EnsemblPlantsGene:GLYMA_04G151800	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR025422	UniProt:K7KK37	EnsemblPlants:KRH63045	ProteinID:KRH63045
ProteinID:KRH63045.1	PFAM:PF14144	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF180	InterPro:TGA_domain
UniParc:UPI000296F294	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:33850466..33851235

Molecular Weight (calculated)

10511.9 Da

IEP (calculated)

4.845

GRAVY (calculated)

0.276

Length

94 amino acids

Sequence
(BLAST)

1: MQAPDVQLNV VVQSVLNHYS NLFIMKADVV KADVLYLLSG AWKPSVERIF LWIGGSRPSQ LLNIIVPQLE PLIDQQIVSI NNLRLSSQQA EDAL

Best Arabidopsis Sequence Match ( AT1G77920.1 )
(BLAST)

001: MMSSSSPTQL ASLRDMGIYE PFQQIVGWGN VFKSDINDHS PNTATSSIIQ VDPRIDDHNN NIKINYDSSH NQIEAEQPSS NDNQDDDGRI HDKMKRRLAQ
101: NREAARKSRL RKKAYVQQLE ESRLKLSQLE QELEKVKQQG HLGPSGSINT GIASFEMEYS HWLQEQSRRV SELRTALQSH ISDIELKMLV ESCLNHYANL
201: FQMKSDAAKA DVFYLISGMW RTSTERFFQW IGGFRPSELL NVVMPYLQPL TDQQILEVRN LQQSSQQAED ALSQGIDKLQ QSLAESIVID AVIESTHYPT
301: HMAAAIENLQ ALEGFVNQAD HLRQQTLQQM AKILTTRQSA RGLLALGEYL HRLRALSSLW AARPQEPT

Arabidopsis Description

TGA7Transcription factor TGA7 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.