CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93068
KRG94592
KRH01571
KRH06898
KRH13334
KRH20680
KRH36324
KRH37416
KRH66789
KRH70543
KRH72058

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06960.1	KRH37416	AT1G64280.1	10659709
AT5G06960.1	KRH37416	AT1G64280.1	10662863
AT5G06960.1	KRH37416	AT1G64280.1	12383081
AT5G06960.1	KRH37416	AT1G64280.1	15634206
AT5G06960.1	KRH66789	AT2G41370.1	21798944
AT5G06960.1	KRH72058	AT2G41370.1	21798944
AT5G06960.1	KRG94592	AT3G02000.1	19218396
AT5G06960.1	KRH01571	AT3G02000.1	19218396
AT5G06960.1	KRH06898	AT3G02000.1	19218396
AT5G06960.1	KRH70543	AT3G02000.1	19218396
AT5G06960.1	KRG93068	AT5G06960.1	17098811
AT5G06960.1	KRH13334	AT5G06960.1	17098811
AT5G06960.1	KRH20680	AT5G06960.1	17098811
AT5G06960.1	KRH36324	AT5G06960.1	17098811
AT5G06960.1	KRG93068	AT5G06960.1	21798944
AT5G06960.1	KRH13334	AT5G06960.1	21798944
AT5G06960.1	KRH20680	AT5G06960.1	21798944
AT5G06960.1	KRH36324	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20680	Soybean	nucleus	85.31	90.41
KRH36324	Soybean	nucleus	59.96	89.76
PGSC0003DMT400024428	Potato	nucleus	55.13	84.57
Solyc11g064950.1.1	Tomato	nucleus	55.13	84.57
GSMUA_Achr8P05800_001	Banana	nucleus	56.14	84.04
GSMUA_Achr3P25020_001	Banana	nucleus	55.94	83.73
KRG93068	Soybean	nucleus	72.84	81.53
Os01t0279900-01	Rice	nucleus	53.92	81.46
Os03t0318600-01	Rice	nucleus	54.53	81.38
EES02530	Sorghum	nucleus	53.92	81.21
KXG39494	Sorghum	nucleus	54.33	80.6
TraesCS3B01G220400.2	Wheat	nucleus	53.72	80.42
TraesCS3A01G190700.2	Wheat	nucleus	53.72	80.42
TraesCS3D01G194800.2	Wheat	nucleus	53.32	79.82
HORVU3Hr1G042790.4	Barley	nucleus	53.12	79.76
TraesCS4B01G178600.1	Wheat	nucleus	53.52	79.64
HORVU4Hr1G052330.3	Barley	nucleus	53.52	79.64
Solyc01g008730.2.1	Tomato	nucleus	52.31	79.51
TraesCS4A01G126300.2	Wheat	nucleus	53.52	79.4
TraesCS4D01G180200.4	Wheat	nucleus	53.52	79.4
AT5G06950.5	Thale cress	nucleus	52.72	79.39
KXG36997	Sorghum	nucleus	53.12	79.28
CDY08443	Canola	nucleus	52.72	79.15
Zm00001d022542_P002	Maize	nucleus	52.92	78.98
TraesCS2B01G113200.2	Wheat	nucleus	53.32	78.87
TraesCS2D01G096800.2	Wheat	nucleus	53.32	78.87
Bra034767.1-P	Field mustard	nucleus	52.52	78.85
Os07t0687700-01	Rice	nucleus	52.92	78.74
TraesCS2A01G097500.2	Wheat	nucleus	53.12	78.57
HORVU3Hr1G042830.1	Barley	cytosol, mitochondrion, nucleus, plastid	23.54	78.52
Bra009241.1-P	Field mustard	nucleus	48.69	78.06
AT5G06960.1	Thale cress	nucleus	51.51	77.58
CDX70053	Canola	nucleus	50.91	77.37
CDX98971	Canola	nucleus	50.91	77.13
CDY00762	Canola	nucleus	51.31	77.04
Bra028713.1-P	Field mustard	nucleus	50.5	76.99
CDY14061	Canola	nucleus	50.5	76.99
Bra038705.1-P	Field mustard	nucleus	51.71	76.95
CDY50562	Canola	nucleus	51.71	76.95
CDY52616	Canola	nucleus	51.51	76.88
CDX73830	Canola	nucleus	51.11	76.74
Bra001443.1-P	Field mustard	nucleus	51.11	76.74
CDY05010	Canola	nucleus	50.3	76.69
PGSC0003DMT400026710	Potato	mitochondrion	26.76	75.57
HORVU2Hr1G016580.5	Barley	nucleus	51.11	75.37
AT3G12250.4	Thale cress	nucleus	53.12	74.37
VIT_13s0084g00660.t01	Wine grape	nucleus	68.61	72.71
KRH66777	Soybean	nucleus	41.65	71.38
CDY42138	Canola	nucleus	44.87	68.83
GSMUA_Achr10P...	Banana	nucleus	62.98	68.49
KXG22247	Sorghum	nucleus	45.27	67.77
Zm00001d008225_P001	Maize	nucleus	55.53	65.71
KRG95103	Soybean	nucleus	60.36	65.36
GSMUA_Achr11P...	Banana	nucleus	62.78	65.27
KRH66771	Soybean	nucleus	60.36	65.22
EES03778	Sorghum	nucleus	60.56	64.32
Zm00001d028936_P001	Maize	nucleus	50.1	63.68
Os05t0492000-00	Rice	nucleus	41.85	63.03
TraesCS3A01G334100.1	Wheat	nucleus	59.36	62.11
HORVU3Hr1G079010.5	Barley	nucleus	59.36	61.84
TraesCS3B01G365100.1	Wheat	nucleus	58.95	61.43
TraesCS3D01G327600.1	Wheat	nucleus	58.95	61.43
Zm00001d010658_P001	Maize	nucleus	41.85	60.29
TraesCS1A01G096300.1	Wheat	nucleus	40.44	60.0
Zm00001d043153_P001	Maize	nucleus	50.3	59.24
TraesCS1B01G127400.1	Wheat	nucleus	40.04	58.53
TraesCS1D01G105300.1	Wheat	nucleus	39.84	58.41
Zm00001d012553_P003	Maize	nucleus	52.72	55.74
KRH35977	Soybean	nucleus	50.1	54.61
HORVU1Hr1G068220.1	Barley	nucleus	37.63	54.52
Os01t0808100-01	Rice	nucleus	39.44	53.85
KRG90784	Soybean	nucleus	49.09	53.63
KRH63045	Soybean	cytosol	10.06	53.19
KRG97639	Soybean	nucleus	38.23	52.49
KRH70569	Soybean	nucleus	48.49	51.61
KRH31239	Soybean	nucleus	37.63	51.37
KRH75411	Soybean	nucleus	49.09	50.21
KRH59415	Soybean	nucleus	36.02	48.38
KRH43266	Soybean	nucleus	36.22	47.49
KRH21813	Soybean	nucleus	15.29	47.2
KRH53141	Soybean	nucleus	33.4	46.76
KRH64780	Soybean	nucleus	32.8	45.03
KRH18838	Soybean	nucleus	33.2	44.59
KRH16629	Soybean	nucleus	32.6	43.78
KRH67029	Soybean	nucleus	42.25	42.77
KRG95350	Soybean	nucleus	41.65	42.16
KRH39187	Soybean	cytosol, extracellular, nucleus	15.09	42.13
HORVU0Hr1G032230.4	Barley	nucleus	29.58	41.88
KRH26635	Soybean	nucleus	40.24	40.98
KRH22685	Soybean	nucleus	40.04	40.61
KRH71904	Soybean	nucleus	39.24	40.29
KRG92164	Soybean	nucleus	18.91	40.0
KRH30432	Soybean	nucleus	39.64	39.96
KRH25227	Soybean	nucleus	39.84	39.52
KRH34622	Soybean	cytosol	17.5	37.66
KRH32997	Soybean	nucleus	39.03	37.52

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100101881	MapMan:15.5.4.1	MapMan:15.5.4.7.1	MapMan:26.8.3.1.2	UniProt:A0A0R0G544
EMBL:ACUP02009696	ncoils:Coil	EnsemblPlantsGene:GLYMA_15G232000	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827	InterPro:IPR025422
EnsemblPlants:KRH13334	ProteinID:KRH13334	ProteinID:KRH13334.1	PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036
PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF244	SMART:SM00338	SUPFAM:SSF57959
InterPro:TGA_domain	UniParc:UPI0006EDFBD2	InterPro:bZIP	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr15:-:43630887..43638935

Molecular Weight (calculated)

55128.5 Da

IEP (calculated)

6.521

GRAVY (calculated)

-0.639

Length

497 amino acids

Sequence
(BLAST)

001: MTSRKNQNVI QQSHDSMLKE HTLSEGSSCQ ALADQGRGRY QESGILADQG RECYQESKTL AARNYTEEST IDSFHVSDFG AFDQSYRIGD AVDLSGNPVY
101: NSLKVNSQTI SPGSVHISSL GQLPTSLEKS PLTNQIEPHR LRLQKVQSSN PGTILVGNTD NQEESAMADA SPRTDISTDG DTDDKNQPYD RNEALAAVSD
201: SSDRSKDKSD QKTLRRLAQN REAARKSRLR KKAYVQQLES SRLKLTQLEQ ELQRARQHGI FISSSGDQAH TLSGNGAMQF DAEYARWLEE QNRQINELKA
301: AVNSHASDTE LRMIVDGILA HYDEIFRLKG VAAKADVFHL LSGMWKTPAE RCFLWLGGFR SSELLKLLVS QLEPLTEQQL MGITNLQQSS QQAEDALSQG
401: MEALQQSLAE TLSTGAPASS GSSGNVANYM GQMAMAMGKL GTLEGFIQQA DNLRQQTLQQ MHRILTTRQS ARALLAIHDY FSRLRALSSL WLARPRD

Best Arabidopsis Sequence Match ( AT3G12250.1 )
(BLAST)

001: MADTSSRTDV STDGDTDHRD LGSDRGHMHA AASDSSDRSK DKLDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSSG
101: DQAHSTGGNG ALAFDAEHSR WLEEKNRQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSDNVA SYMGQMAMAM GQLGTLEGFI RQADNLRLQT LQQMLRVLTT
301: RQSARALLAI HDYSSRLRAL SSLWLARPRE

Arabidopsis Description

TGA6TGACG motif-binding factor 6 [Source:UniProtKB/TrEMBL;Acc:F4J8P7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.