Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G180200.4 | Wheat | nucleus | 100.0 | 100.0 |
| TraesCS4B01G178600.1 | Wheat | nucleus | 99.4 | 99.7 |
| HORVU4Hr1G052330.3 | Barley | nucleus | 99.4 | 99.7 |
| KXG39494 | Sorghum | nucleus | 94.63 | 94.63 |
| Os03t0318600-01 | Rice | nucleus | 93.73 | 94.29 |
| TraesCS2A01G097500.2 | Wheat | nucleus | 89.55 | 89.29 |
| KRH36324 | Soybean | nucleus | 80.9 | 81.63 |
| Solyc11g064950.1.1 | Tomato | nucleus | 78.51 | 81.17 |
| PGSC0003DMT400024428 | Potato | nucleus | 78.51 | 81.17 |
| TraesCS3A01G190700.2 | Wheat | nucleus | 77.31 | 78.01 |
| Solyc01g008730.2.1 | Tomato | nucleus | 75.52 | 77.37 |
| CDY08443 | Canola | nucleus | 73.73 | 74.62 |
| Bra009241.1-P | Field mustard | nucleus | 68.96 | 74.52 |
| Bra034767.1-P | Field mustard | nucleus | 73.43 | 74.32 |
| AT5G06950.5 | Thale cress | nucleus | 73.13 | 74.24 |
| Bra001443.1-P | Field mustard | nucleus | 73.13 | 74.02 |
| CDX73830 | Canola | nucleus | 73.13 | 74.02 |
| PGSC0003DMT400026710 | Potato | mitochondrion | 38.81 | 73.86 |
| CDY00762 | Canola | nucleus | 72.84 | 73.72 |
| CDY50562 | Canola | nucleus | 73.43 | 73.65 |
| Bra038705.1-P | Field mustard | nucleus | 73.43 | 73.65 |
| CDY52616 | Canola | nucleus | 73.13 | 73.57 |
| CDX70053 | Canola | nucleus | 71.04 | 72.78 |
| CDX98971 | Canola | nucleus | 71.04 | 72.56 |
| Zm00001d028936_P001 | Maize | nucleus | 82.99 | 71.1 |
| AT5G06960.1 | Thale cress | nucleus | 69.25 | 70.3 |
| CDY05010 | Canola | nucleus | 67.76 | 69.63 |
| Bra028713.1-P | Field mustard | nucleus | 67.46 | 69.33 |
| CDY14061 | Canola | nucleus | 67.46 | 69.33 |
| AT3G12250.4 | Thale cress | nucleus | 73.13 | 69.01 |
| KRH66777 | Soybean | nucleus | 59.7 | 68.97 |
| CDY42138 | Canola | nucleus | 62.99 | 65.12 |
| PGSC0003DMT400060922 | Potato | nucleus | 50.45 | 63.06 |
| Solyc10g080780.1.1 | Tomato | cytosol | 50.15 | 62.45 |
| KRG93068 | Soybean | nucleus | 80.3 | 60.59 |
| TraesCS1A01G096300.1 | Wheat | nucleus | 60.3 | 60.3 |
| VIT_08s0007g05170.t01 | Wine grape | nucleus | 80.3 | 59.65 |
| VIT_13s0084g00660.t01 | Wine grape | nucleus | 82.39 | 58.85 |
| PGSC0003DMT400060926 | Potato | nucleus | 74.63 | 57.74 |
| KRH20680 | Soybean | nucleus | 79.4 | 56.72 |
| KRG95103 | Soybean | nucleus | 76.12 | 55.56 |
| Solyc10g080770.1.1 | Tomato | nucleus | 74.63 | 55.56 |
| KRH66771 | Soybean | nucleus | 75.82 | 55.22 |
| TraesCS3A01G334100.1 | Wheat | nucleus | 77.91 | 54.95 |
| KRH13334 | Soybean | nucleus | 79.4 | 53.52 |
| TraesCS7A01G207100.1 | Wheat | nucleus | 62.09 | 46.95 |
| GSMUA_Achr8P21670_001 | Banana | nucleus | 80.3 | 46.22 |
| TraesCS2A01G526300.1 | Wheat | nucleus | 47.46 | 37.95 |
| TraesCS4A01G183400.2 | Wheat | nucleus | 56.42 | 34.94 |
| TraesCS6A01G165800.1 | Wheat | nucleus | 43.88 | 31.55 |
| TraesCS5A01G174200.1 | Wheat | nucleus | 43.88 | 31.48 |
| TraesCS5A01G265600.1 | Wheat | nucleus | 47.46 | 30.7 |
| TraesCS3A01G372400.2 | Wheat | nucleus | 51.94 | 30.37 |
| TraesCS1A01G276600.2 | Wheat | nucleus | 47.46 | 30.23 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | MapMan:15.5.4.7.1 | MapMan:26.8.3.1.2 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| InterPro:IPR004827 | InterPro:IPR025422 | PFAM:PF00170 | PFAM:PF14144 | ScanProsite:PS00036 | PFscan:PS50217 |
| PFscan:PS51806 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF220 | SMART:SM00338 | SUPFAM:SSF57959 | InterPro:TGA_domain |
| EnsemblPlantsGene:TraesCS4A01G126300 | EnsemblPlants:TraesCS4A01G126300.2 | InterPro:bZIP | SEG:seg | : | : |
Description
No Description!
Coordinates
chr4A:-:162423479..162426361
Molecular Weight (calculated)
37351.5 Da
IEP (calculated)
8.459
GRAVY (calculated)
-0.491
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MADASSRTDT SIVVDTDDKN QRMENGQNGA IVPSNSSEPS DRSDRPMDQK VVLRRLAQNR EAARKSRLRK KAYVQQLESS KLKLASLEQE LQKARQQGIF
101: ISSSGDQTHA MSGNGAMTFD LEYTRWLEEQ NKQINELRTA VNAHASDSDL RLIVDGIMAH YDEIFKLKGA AAKADVFHIL SGMWKTPAER CFLWLGGFRS
201: SELLKLLVNQ LEPLTEQQLM GLSSLEQSSH QAEDALSQGM EALQQSLAET LAGSLGPSGS SGNVANYMGQ MAMAMGKLGT LENFLRQADN LRQQTLHQMQ
301: RILTIRQAAR ALLAIHDYFS RLRALSSLWL ARPRE
101: ISSSGDQTHA MSGNGAMTFD LEYTRWLEEQ NKQINELRTA VNAHASDSDL RLIVDGIMAH YDEIFKLKGA AAKADVFHIL SGMWKTPAER CFLWLGGFRS
201: SELLKLLVNQ LEPLTEQQLM GLSSLEQSSH QAEDALSQGM EALQQSLAET LAGSLGPSGS SGNVANYMGQ MAMAMGKLGT LENFLRQADN LRQQTLHQMQ
301: RILTIRQAAR ALLAIHDYFS RLRALSSLWL ARPRE
001: MADTSSRTDV STDGDTDHRD LGSDRGHMHA AASDSSDRSK DKLDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSSG
101: DQAHSTGGNG ALAFDAEHSR WLEEKNRQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSDNVA SYMGQMAMAM GQLGTLEGFI RQADNLRLQT LQQMLRVLTT
301: RQSARALLAI HDYSSRLRAL SSLWLARPRE
101: DQAHSTGGNG ALAFDAEHSR WLEEKNRQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSDNVA SYMGQMAMAM GQLGTLEGFI RQADNLRLQT LQQMLRVLTT
301: RQSARALLAI HDYSSRLRAL SSLWLARPRE
Arabidopsis Description
TGA6TGACG motif-binding factor 6 [Source:UniProtKB/TrEMBL;Acc:F4J8P7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.