Factsheet for GSMUA_Achr8P21670_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P05800_001	Banana	nucleus	49.48	86.75
GSMUA_Achr3P25020_001	Banana	nucleus	48.28	84.64
KXG39494	Sorghum	nucleus	46.74	81.19
Os07t0687700-01	Rice	nucleus	46.39	80.84
TraesCS4B01G178600.1	Wheat	nucleus	46.39	80.84
HORVU4Hr1G052330.3	Barley	nucleus	46.39	80.84
Os03t0318600-01	Rice	nucleus	46.22	80.78
TraesCS4D01G180200.4	Wheat	nucleus	46.22	80.3
TraesCS4A01G126300.2	Wheat	nucleus	46.22	80.3
Zm00001d022542_P002	Maize	nucleus	45.88	80.18
KXG36997	Sorghum	nucleus	45.88	80.18
TraesCS2B01G113200.2	Wheat	nucleus	45.88	79.46
TraesCS2D01G096800.2	Wheat	nucleus	45.7	79.17
TraesCS2A01G097500.2	Wheat	nucleus	45.53	78.87
HORVU2Hr1G016580.5	Barley	nucleus	43.99	75.96
GSMUA_Achr10P...	Banana	nucleus	59.28	75.49
GSMUA_Achr11P...	Banana	nucleus	58.93	71.76
Zm00001d028936_P001	Maize	nucleus	43.13	64.19
GSMUA_AchrUn_...	Banana	nucleus	51.2	60.57
GSMUA_Achr9P15550_001	Banana	nucleus	43.3	58.74
GSMUA_Achr5P16630_001	Banana	nucleus	35.05	55.89
GSMUA_AchrUn_...	Banana	nucleus	31.96	52.54
GSMUA_Achr11P...	Banana	cytosol	21.65	52.07
GSMUA_Achr10P...	Banana	nucleus	30.41	50.43
GSMUA_Achr9P27700_001	Banana	nucleus	31.27	48.53
GSMUA_Achr3P11150_001	Banana	nucleus	32.3	45.41
GSMUA_Achr2P06770_001	Banana	nucleus	35.22	42.89
GSMUA_Achr5P26200_001	Banana	nucleus	29.73	42.61
GSMUA_Achr11P...	Banana	nucleus	34.54	40.85
GSMUA_Achr10P...	Banana	nucleus	32.82	40.47
GSMUA_Achr3P22700_001	Banana	nucleus	32.82	37.75
GSMUA_Achr9P20200_001	Banana	plastid	31.79	33.82
GSMUA_Achr11P...	Banana	nucleus	13.23	24.92

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	MapMan:2.4.1.4.1.3	MapMan:26.8.3.1.2	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr8G21670_001	EnsemblPlants:GSMUA_Achr8P21670_001	EnsemblPlants:GSMUA_Achr8T21670_001	InterPro:IPR004827	InterPro:IPR025422
UniProt:M0TSH0	PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806
PANTHER:PTHR22952	PANTHER:PTHR22952:SF244	SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI0002959CF9
InterPro:bZIP	SEG:seg	:	:	:	:

Description

Transcription factor HBP-1b(c1) (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr8G21670_001]

Coordinates

chr8:+:26487097..26496682

Molecular Weight (calculated)

63867.5 Da

IEP (calculated)

9.871

GRAVY (calculated)

-0.530

Length

582 amino acids

Sequence
(BLAST)

001: MGSRKGGVGV EDGKRAASGM PSFVSSPVAQ NIVAEGNTKH PSRVSDFGML EQSVGRNLEA AADFIRNPEV NPKPSVQTSI SGPSHFDNFS KPLGISNIST
101: STARVGSSTV PLHKGQRPHL VSLASGQFEN WGETTMADAS PRTDASTDVD AGDKNHKPKR GQVAAIAASD SSDKTKEKTG DQKTLRRLAQ NREAARKSRL
201: RKKAYVQQLE GSRLKLTHIE QELQHARQQG IFISSSGDQS HAMSGNEGLA FNSEYARWRE EHNRQISELR TAVNAHASEN DLRAIVDGIM AHYDEIFKLK
301: GTAAKADVFH MLSGMWKTPA ERCFLWLGGF RSSELLKLLT SQLEPLTEQQ LMGLCNLQQS SQQAEDALSQ GMEALQQSLA ETLAGSLGSS GSSGNVANYM
401: GQMAMAMGKL GTLENFLCQA DNLRQQTLQQ MCRILTTRQA ARALLAINDY FSRLHALSSL WLARPREFLR SWRAERRPGS GRSTSSKWPA DPNSEDVVAV
501: SQLRSTVSAE IRKNAHIANP KVIDLLLFKG TEELSNIVTH SKQRHHLIGQ YVVGRGGLVQ DMGTKEQGIS EFLKQFYTSN YF

Best Arabidopsis Sequence Match ( AT3G12250.1 )
(BLAST)

001: MADTSSRTDV STDGDTDHRD LGSDRGHMHA AASDSSDRSK DKLDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSSG
101: DQAHSTGGNG ALAFDAEHSR WLEEKNRQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSDNVA SYMGQMAMAM GQLGTLEGFI RQADNLRLQT LQQMLRVLTT
301: RQSARALLAI HDYSSRLRAL SSLWLARPRE

Arabidopsis Description

TGA6TGACG motif-binding factor 6 [Source:UniProtKB/TrEMBL;Acc:F4J8P7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.