Factsheet for GSMUA_AchrUn_randomP12130_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P05800_001	Banana	nucleus	55.28	81.93
GSMUA_Achr3P25020_001	Banana	nucleus	54.47	80.72
GSMUA_Achr10P...	Banana	nucleus	63.41	68.27
GSMUA_Achr11P...	Banana	nucleus	63.01	64.85
GSMUA_Achr9P15550_001	Banana	nucleus	51.02	58.51
GSMUA_Achr5P16630_001	Banana	nucleus	39.02	52.6
GSMUA_Achr10P...	Banana	nucleus	37.4	52.42
GSMUA_AchrUn_...	Banana	nucleus	37.4	51.98
GSMUA_Achr8P21670_001	Banana	nucleus	60.57	51.2
GSMUA_Achr11P...	Banana	cytosol	25.0	50.83
GSMUA_Achr9P27700_001	Banana	nucleus	35.77	46.93
GSMUA_Achr3P11150_001	Banana	nucleus	37.8	44.93
GSMUA_Achr5P26200_001	Banana	nucleus	33.54	40.64
GSMUA_Achr2P06770_001	Banana	nucleus	39.23	40.38
GSMUA_Achr10P...	Banana	nucleus	38.62	40.25
GSMUA_Achr11P...	Banana	nucleus	38.41	38.41
GSMUA_Achr3P22700_001	Banana	nucleus	35.77	34.78
GSMUA_Achr9P20200_001	Banana	plastid	37.4	33.64
GSMUA_Achr11P...	Banana	nucleus	14.63	23.3

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	MapMan:26.8.3.1.2	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
EnsemblPlantsGene:GSMUA_AchrUn_randomG12130_001	EnsemblPlants:GSMUA_AchrUn_randomP12130_001	EnsemblPlants:GSMUA_AchrUn_randomT12130_001	InterPro:IPR004827	InterPro:IPR025422	UniProt:M0U8H2
PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952
PANTHER:PTHR22952:SF255	SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI0002969B27	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

Transcription factor HBP-1b(c1) (Fragment) [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG12130_001]

Coordinates

chrchrUn_random:-:58107773..58125149

Molecular Weight (calculated)

54530.7 Da

IEP (calculated)

6.591

GRAVY (calculated)

-0.341

Length

492 amino acids

Sequence
(BLAST)

001: MFPVAVSSSC QSIDSVHSFW IYVLQILENK WILIGRDVLE LNICKVDRFG TTEGNILHTS RGSNVRTLEK SNIFQIEEAT DLSTNPLPNK KSGDLNLKTS
101: GLSVASDPLQ FGVYDSLVAS SGMTLLAKRA GTLAVTIQKA HQHTLLSSSS AHIENWGEST MADTSPWTDT STDVDTDEKY QTFEERQVAD VAASDSSDKS
201: KDKSDIKTLR RLAQNREAAR KSRLKKKAYI QQLESSNLTL NKLEQELQRA RQQGIFISSS GDQSHSMGGN GALAFDMEYA RWLEEQNQQA KELRAAANSH
301: ASDDVLRVIV DDVMKHYDKL FRIKSVAAKA DVFHILSGMW MMPAERCFLW LGGFRSSELL KLLASHLEPL AEQQLVGICN LQQSSQQAED ALSQGMEALQ
401: QSLSETLVSG SLGSAGSSGN IANYMGQMAM AMGKLGTLEN FLCQADNLRQ QTLQQLQRIL TTRQSARALL AIHDYFSRLR ALSSLWLARP QE

Best Arabidopsis Sequence Match ( AT3G12250.1 )
(BLAST)

001: MADTSSRTDV STDGDTDHRD LGSDRGHMHA AASDSSDRSK DKLDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSSG
101: DQAHSTGGNG ALAFDAEHSR WLEEKNRQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSDNVA SYMGQMAMAM GQLGTLEGFI RQADNLRLQT LQQMLRVLTT
301: RQSARALLAI HDYSSRLRAL SSLWLARPRE

Arabidopsis Description

TGA6TGACG motif-binding factor 6 [Source:UniProtKB/TrEMBL;Acc:F4J8P7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.