Factsheet for GSMUA_Achr5P26200_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	38.92	65.29
GSMUA_Achr10P...	Banana	nucleus	62.81	54.03
GSMUA_Achr8P05800_001	Banana	nucleus	43.35	53.01
Solyc11g068370.1.1	Tomato	nucleus	48.28	52.69
GSMUA_Achr3P25020_001	Banana	nucleus	42.36	51.81
PGSC0003DMT400067782	Potato	nucleus	41.63	51.37
GSMUA_Achr11P...	Banana	nucleus	61.58	50.81
GSMUA_Achr2P06770_001	Banana	nucleus	56.16	47.7
GSMUA_Achr3P22700_001	Banana	nucleus	59.11	47.43
Bra031622.1-P	Field mustard	nucleus	49.75	47.2
CDY22689	Canola	nucleus	49.51	46.96
KRH30432	Soybean	nucleus	53.94	44.42
VIT_06s0080g00360.t01	Wine grape	nucleus	54.43	44.2
KRH22685	Soybean	nucleus	53.2	44.08
KRH26635	Soybean	nucleus	52.96	44.06
Solyc06g074320.2.1	Tomato	nucleus	54.19	43.91
KRH25227	Soybean	nucleus	53.69	43.51
PGSC0003DMT400018306	Potato	nucleus	52.22	43.44
AT1G08320.4	Thale cress	nucleus	51.23	43.24
CDX95068	Canola	nucleus	50.74	43.1
CDX93571	Canola	nucleus	50.74	43.1
Os05t0443900-01	Rice	nucleus	51.23	42.98
Bra018634.1-P	Field mustard	nucleus	50.25	42.95
GSMUA_Achr5P16630_001	Banana	nucleus	38.18	42.47
CDY06309	Canola	nucleus	50.0	41.94
Os01t0859500-01	Rice	nucleus	54.43	41.0
GSMUA_AchrUn_...	Banana	nucleus	35.71	40.96
GSMUA_Achr9P27700_001	Banana	nucleus	37.44	40.53
KXG33735	Sorghum	nucleus	52.96	40.34
GSMUA_Achr10P...	Banana	nucleus	34.73	40.17
OQU78097	Sorghum	nucleus	49.26	38.31
HORVU1Hr1G073870.2	Barley	nucleus	49.26	38.24
GSMUA_Achr10P...	Banana	nucleus	42.86	38.07
TraesCS3B01G404800.2	Wheat	nucleus	53.69	38.05
TraesCS3A01G372400.2	Wheat	nucleus	53.69	38.05
Zm00001d038296_P001	Maize	nucleus	48.52	37.96
GSMUA_Achr3P11150_001	Banana	nucleus	38.67	37.92
TraesCS1A01G276600.2	Wheat	nucleus	48.77	37.64
TraesCS1B01G285800.1	Wheat	nucleus	48.77	37.64
TraesCS1D01G276100.2	Wheat	nucleus	48.77	37.64
TraesCS3D01G365200.3	Wheat	nucleus	53.69	37.59
GSMUA_Achr9P15550_001	Banana	nucleus	38.92	36.83
GSMUA_Achr11P...	Banana	nucleus	43.35	36.82
Zm00001d012294_P009	Maize	nucleus	50.25	36.76
Zm00001d042777_P006	Maize	nucleus	53.69	33.54
GSMUA_AchrUn_...	Banana	nucleus	40.64	33.54
GSMUA_Achr8P21670_001	Banana	nucleus	42.61	29.73
GSMUA_Achr9P20200_001	Banana	plastid	37.44	27.79
GSMUA_Achr11P...	Banana	nucleus	19.7	25.89
HORVU3Hr1G084340.10	Barley	nucleus	35.71	25.48

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr5G26200_001
EnsemblPlants:GSMUA_Achr5P26200_001	EnsemblPlants:GSMUA_Achr5T26200_001	InterPro:IPR004827	InterPro:IPR025422	UniProt:M0T1U5	PFAM:PF00170
PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF215
SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI000296C7A0	InterPro:bZIP	SEG:seg

Description

Transcription factor HBP-1b(c1) (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr5G26200_001]

Coordinates

chr5:+:27083686..27087089

Molecular Weight (calculated)

45511.5 Da

IEP (calculated)

8.662

GRAVY (calculated)

-0.392

Length

406 amino acids

Sequence
(BLAST)

001: MIHQQIPRQV NTLSARSFDP GSAQNYGCHV GSDSPDNSKD SSGELADRKQ QQEMMMSSTV SRTGETRNPQ PSSQEKRTMT GSTTAKDGKV LDDKALRRLA
101: QNREAARKSR LRKKAYVQQL ESSKVRLQQI EHDLDRARSQ GLFLAAAGST GISSFLATGA ALFDMEYARW LAERCKLMSV LRNALQAHPP EGNLGVLVDE
201: CIRHYDELFQ LKATVAKADV FHLLNGTWKT PAERCFLWMG GFKPSELLNI LIPKLDPLEQ QLVWICNLKH SSEQAEEALS LGLGHLHLSL TQIIAGRSLC
301: DGIGDGEYMN LMAAALGKLV DFEEFVSQAD NLRRQTLHNL RRHLTIRLAA RCFLAIGEYY TRLRALSSIL TSRSPRESLI ADDTVVPTTT DLQIVHRPLQ
401: HHFYNF

Best Arabidopsis Sequence Match ( AT1G08320.1 )
(BLAST)

001: MANHRMSEAT NHNHNHHLPY SLIHGLNNNH PSSGFINQDG SSSFDFGELE EAIVLQGVKY RNEEAKPPLL GGGGGATTLE MFPSWPIRTH QTLPTESSKS
101: GGESSDSGSA NFSGKAESQQ PESPMSSKHH LMLQPHHNNM ANSSSTSGLP STSRTLAPPK PSEDKRKATT SGKQLDAKTL RRLAQNREAA RKSRLRKKAY
201: VQQLESSRIK LSQLEQELQR ARSQGLFMGG CGPPGPNITS GAAIFDMEYG RWLEDDNRHM SEIRTGLQAH LSDNDLRLIV DGYIAHFDEI FRLKAVAAKA
301: DVFHLIIGTW MSPAERCFIW MAGFRPSDLI KILVSQMDLL TEQQLMGIYS LQHSSQQAEE ALSQGLEQLQ QSLIDTLAAS PVIDGMQQMA VALGKISNLE
401: GFIRQADNLR QQTVHQLRRI LTVRQAARCF LVIGEYYGRL RALSSLWLSR PRETLMSDET SCQTTTDLQI VQSSRNHFSN F

Arabidopsis Description

TGA9Transcription factor TGA9 [Source:UniProtKB/Swiss-Prot;Acc:Q93XM6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.