Factsheet for VIT_06s0080g00360.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26635	Soybean	nucleus	73.8	75.61
KRH22685	Soybean	nucleus	73.4	74.9
KRH25227	Soybean	nucleus	74.2	74.05
KRH30432	Soybean	nucleus	72.8	73.83
PGSC0003DMT400067782	Potato	nucleus	47.6	72.34
Solyc11g068370.1.1	Tomato	nucleus	53.6	72.04
Solyc06g074320.2.1	Tomato	nucleus	71.8	71.66
AT1G08320.4	Thale cress	nucleus	68.6	71.31
PGSC0003DMT400018306	Potato	nucleus	69.4	71.11
Bra018634.1-P	Field mustard	nucleus	66.4	69.89
CDX95068	Canola	nucleus	66.4	69.46
CDX93571	Canola	nucleus	66.0	69.04
CDY06309	Canola	nucleus	66.2	68.39
Bra031622.1-P	Field mustard	nucleus	58.0	67.76
CDY22689	Canola	nucleus	58.0	67.76
Zm00001d023424_P001	Maize	nucleus	40.2	64.84
HORVU4Hr1G025130.10	Barley	nucleus	46.6	64.19
GSMUA_Achr2P06770_001	Banana	nucleus	57.4	60.04
GSMUA_Achr11P...	Banana	cytosol	29.0	59.92
GSMUA_Achr11P...	Banana	nucleus	57.6	58.54
Os11t0152700-01	Rice	nucleus	55.0	56.82
OQU82891	Sorghum	nucleus	55.0	56.35
Zm00001d052543_P001	Maize	nucleus	54.4	55.97
KXG22976	Sorghum	nucleus	54.0	55.9
Os12t0152900-01	Rice	nucleus	53.6	54.81
GSMUA_Achr5P26200_001	Banana	nucleus	44.2	54.43
GSMUA_Achr10P...	Banana	nucleus	51.0	54.03
GSMUA_Achr3P22700_001	Banana	nucleus	53.8	53.16
Os05t0443900-01	Rice	nucleus	49.8	51.45
VIT_07s0031g01320.t01	Wine grape	nucleus	35.6	51.0
Os01t0859500-01	Rice	nucleus	54.4	50.46
TraesCS4D01G129900.1	Wheat	nucleus	53.4	49.63
KXG33735	Sorghum	nucleus	52.8	49.53
TraesCS4A01G183400.2	Wheat	nucleus	53.4	49.35
VIT_18s0001g04470.t01	Wine grape	nucleus	35.6	49.04
HORVU1Hr1G073870.2	Barley	nucleus	49.8	47.61
TraesCS4B01G135000.1	Wheat	nucleus	53.8	47.53
TraesCS1B01G285800.1	Wheat	nucleus	49.8	47.34
VIT_13s0084g00660.t01	Wine grape	nucleus	44.4	47.33
OQU78097	Sorghum	nucleus	49.4	47.32
VIT_08s0007g05170.t01	Wine grape	nucleus	42.6	47.23
Zm00001d038296_P001	Maize	nucleus	49.0	47.21
TraesCS1D01G276100.2	Wheat	nucleus	49.4	46.96
TraesCS1A01G276600.2	Wheat	nucleus	49.4	46.96
TraesCS3B01G404800.2	Wheat	nucleus	53.6	46.77
TraesCS3D01G365200.3	Wheat	nucleus	53.8	46.38
TraesCS3A01G372400.2	Wheat	nucleus	53.0	46.25
Zm00001d012294_P009	Maize	nucleus	51.0	45.95
VIT_01s0011g03230.t01	Wine grape	nucleus	40.6	44.81
VIT_08s0007g06160.t01	Wine grape	nucleus	43.8	44.6
GSMUA_Achr11P...	Banana	nucleus	25.2	40.78
Zm00001d042777_P006	Maize	nucleus	53.0	40.77
HORVU3Hr1G084340.10	Barley	nucleus	37.8	33.22

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100258619	wikigene:100258619	MapMan:15.5.4.1	MapMan:15.5.4.7.1	ProteinID:CBI28327
ProteinID:CBI28327.3	ncoils:Coil	UniProt:D7TCV4	EMBL:FN595757	GO:GO:0000003	GO:GO:0002237
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607	GO:GO:0009791	GO:GO:0009908
GO:GO:0009987	GO:GO:0015074	GO:GO:0042803	GO:GO:0043565	GO:GO:0048653	GO:GO:0071588
InterPro:IPR004827	InterPro:IPR025422	EntrezGene:LOC100258619	wikigene:LOC100258619	PFAM:PF00170	PFAM:PF14144
ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF179	SMART:SM00338
SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI0001BE2E9F	ArrayExpress:VIT_06s0080g00360	EnsemblPlantsGene:VIT_06s0080g00360	EnsemblPlants:VIT_06s0080g00360.t01
unigene:Vvi.24036	RefSeq:XP_002276067	RefSeq:XP_002276067.1	RefSeq:XP_002276067.2	RefSeq:XP_019076297.1	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:20304714..20311349

Molecular Weight (calculated)

54952.0 Da

IEP (calculated)

6.939

GRAVY (calculated)

-0.459

Length

500 amino acids

Sequence
(BLAST)

001: MATHRVGETN LSGSAPSNHH LPYAVLHGIS PPAATFINQE GSAFDFGELE EAIVLQGVKI RNDEAKTSLF TARPAATLEM FPSWPMRFQQ TQRGSSKSGG
101: ESTDSGSAVN TLSSRAEAQL EPESPISIKP TSDHQAFDQK HLQFQHQQQL EMASDTSRLA GPSESQPAAS KPPPEKRKGA GSTSEKTLDA KTLRRLAQNR
201: EAARKSRLRK KAYVQQLESS RIKLTQLEQD LQRARSQGLF LGGGGGGGGG GGAGGIISPG AAIFDMEYAR WLEDDHRHMS ELRTGLQAHL LDGDLRVIVD
301: GYLSHYDEIF RLKGVAAKSD VFHLITGMWT TPAERCFLWM GGFRPSDLIK MLIAQLDPLT EQQVMGIYGL QHSSQQAEEA LSQGQEQLQQ SLIDTIASGS
401: VADDMAHMVM ALGQLTNLEG FVRQADNLRQ QTIHQLCRIL TVRQAARCFL VIGEYYGRLR ALSSLWASRP REAMMGDEHS CQTTTDLHMV QSSHSHFTNF

Best Arabidopsis Sequence Match ( AT1G08320.3 )
(BLAST)

001: MANHRMSEAT NHNHNHHLPY SLIHGLNNNH PSSGFINQDG SSSFDFGELE EAIVLQGVKY RNEEAKPPLL GGGGGATTLE MFPSWPIRTH QTLPTESSKS
101: GGESSDSGSA NFSGKAESQQ PESPMSSKHH LMLQPHHNNM ANSSSTSGLP STSRTLAPPK PSEDKRKATT SGKQLDAKTL RRLAQNREAA RKSRLRKKAY
201: VQQLESSRIK LSQLEQELQR ARSQGLFMGG CGPPGPNITS GAAIFDMEYG RWLEDDNRHM SEIRTGLQAH LSDNDLRLIV DGYIAHFDEI FRLKAVAAKA
301: DVFHLIIGTW MSPAERCFIW MAGFRPSDLI KILVSQMDLL TEQQLMGIYS LQHSSQQAEE ALSQGLEQLQ QSLIDTLAAS PVIDGMQQMA VALGKISNLE
401: GFIRQADNLR QQTVHQLRRI LTVRQAARCF LVIGEYYGRL RALSSLWLSR PRETLMSDET SCQTTTDLQI VQSSRNHFSN F

Arabidopsis Description

TGA9Transcription factor TGA9 [Source:UniProtKB/Swiss-Prot;Acc:Q93XM6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.