Factsheet for VIT_07s0031g01320.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97639	Soybean	nucleus	75.07	72.38
AT5G65210.2	Thale cress	nucleus	75.64	71.74
AT5G10030.3	Thale cress	nucleus	74.79	71.7
KRH31239	Soybean	nucleus	74.21	71.15
Bra028604.1-P	Field mustard	nucleus	73.35	70.72
CDX85782	Canola	nucleus	73.35	70.72
Bra024366.1-P	Field mustard	nucleus	74.21	70.57
CDY08810	Canola	nucleus	74.21	70.57
CDY40074	Canola	nucleus	72.21	69.61
GSMUA_Achr5P16630_001	Banana	nucleus	72.78	69.59
CDY33975	Canola	nucleus	73.64	69.46
Bra031871.1-P	Field mustard	nucleus	73.35	69.19
CDY37811	Canola	nucleus	73.35	69.19
CDY14552	Canola	nucleus	72.49	68.94
VIT_18s0001g04470.t01	Wine grape	nucleus	71.06	68.32
CDX69866	Canola	nucleus	70.2	67.31
Bra009063.1-P	Field mustard	nucleus	70.2	67.31
CDY21625	Canola	nucleus	69.91	67.03
PGSC0003DMT400033308	Potato	nucleus	67.91	66.57
CDY18683	Canola	cytosol	70.49	66.13
KRH59415	Soybean	nucleus	69.34	65.41
GSMUA_AchrUn_...	Banana	nucleus	66.19	65.25
Solyc04g011670.2.1	Tomato	nucleus	69.63	64.97
CDX81273	Canola	nucleus	71.92	64.52
KRH43266	Soybean	nucleus	69.91	64.38
Solyc04g054320.2.1	Tomato	nucleus	68.19	64.32
GSMUA_Achr10P...	Banana	nucleus	64.47	64.1
Bra037809.1-P	Field mustard	nucleus	68.77	61.22
PGSC0003DMT400016235	Potato	nucleus	66.48	59.18
Zm00001d016312_P001	Maize	cytosol	15.47	58.06
Os04t0637000-01	Rice	nucleus	57.31	50.38
KXG27222	Sorghum	nucleus	58.45	50.0
KXG38496	Sorghum	nucleus	44.41	49.84
Zm00001d026398_P006	Maize	nucleus	56.45	47.82
KRG92164	Soybean	nucleus	31.23	46.38
TraesCS2A01G526300.1	Wheat	nucleus	55.59	46.3
Zm00001d024160_P003	Maize	nucleus	56.16	46.23
TraesCS2D01G529000.1	Wheat	nucleus	55.59	45.65
KRH34622	Soybean	cytosol	30.09	45.45
Bra037374.1-P	Field mustard	nucleus	40.69	45.22
TraesCS2B01G556600.1	Wheat	nucleus	56.16	45.06
Zm00001d041428_P001	Maize	cytosol	19.77	44.23
VIT_13s0084g00660.t01	Wine grape	nucleus	57.59	42.86
VIT_08s0007g05170.t01	Wine grape	nucleus	55.3	42.79
Zm00001d002143_P002	Maize	cytosol	53.58	42.6
VIT_01s0011g03230.t01	Wine grape	nucleus	54.44	41.94
Os08t0176900-01	Rice	nucleus	44.7	40.1
OQU79985	Sorghum	golgi, vacuole	56.45	38.18
VIT_06s0080g00360.t01	Wine grape	nucleus	51.0	35.6
VIT_08s0007g06160.t01	Wine grape	nucleus	48.71	34.62
HORVU2Hr1G116090.2	Barley	cytosol	36.39	30.02

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100249156	wikigene:100249156	MapMan:15.5.4.1	MapMan:15.5.4.7.1	EMBL:AM488698
ProteinID:CAN62273	ProteinID:CAN62273.1	ProteinID:CBI21482	ProteinID:CBI21482.3	ncoils:Coil	UniProt:D7SW33
EMBL:FN595233	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827	InterPro:IPR025422	EntrezGene:LOC100249156	wikigene:LOC100249156
PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952
PANTHER:PTHR22952:SF266	SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI0001BE19CF	ArrayExpress:VIT_07s0031g01320
EnsemblPlantsGene:VIT_07s0031g01320	EnsemblPlants:VIT_07s0031g01320.t01	RefSeq:XP_002280782	RefSeq:XP_002280782.1	InterPro:bZIP	SEG:seg

Description

No Description!

Coordinates

chr7:+:17404970..17410595

Molecular Weight (calculated)

39127.7 Da

IEP (calculated)

6.323

GRAVY (calculated)

-0.375

Length

349 amino acids

Sequence
(BLAST)

001: MGIYEPLHQI STWGESFKTN GCPNTSASTI AELEAKLDNQ SEDTSHGTPG PSDKYDQEAT KPVDKVQRRL AQNREAARKS RLRKKAYVQE LESSRVKLMQ
101: LEQELERARQ QGLYIGGGLD AGHLGFSGAV NSGIAAFEME YGHWVEEQSS QICELRTALH AHISDVELRI LVETAMNHYF NLFRMKANAA KADVFYMMSG
201: MWKTSAERFF LWIGGFRPSE LLKVLVPQLD PLTDQQILDV CNLRQSCQQA EDALTQGMEK LQQILAEAVA AGQLGEGSYI PQLATALEKL EAVVSFVNQA
301: DHLRQETLQQ MVRILTVRQA ARGLLALGEY FQRLRALSSL WATRPREPA

Best Arabidopsis Sequence Match ( AT5G65210.5 )
(BLAST)

001: MNSTSTHFVP PRRVGIYEPV HQFGMWGESF KSNISNGTMN TPNHIIIPNN QKLDNNVSED TSHGTAGTPH MFDQEASTSR HPDKIQRRLA QNREAARKSR
101: LRKKAYVQQL ETSRLKLIQL EQELDRARQQ GFYVGNGIDT NSLGFSETMN PGIAAFEMEY GHWVEEQNRQ ICELRTVLHG HINDIELRSL VENAMKHYFE
201: LFRMKSSAAK ADVFFVMSGM WRTSAERFFL WIGGFRPSDL LKVLLPHFDV LTDQQLLDVC NLKQSCQQAE DALTQGMEKL QHTLADCVAA GQLGEGSYIP
301: QVNSAMDRLE ALVSFVNQAD HLRHETLQQM YRILTTRQAA RGLLALGEYF QRLRALSSSW ATRHREPT

Arabidopsis Description

TGA1Transcription factor TGA1 [Source:UniProtKB/Swiss-Prot;Acc:Q39237]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.