Factsheet for GSMUA_Achr5P16630_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P16670_001
GSMUA_Achr3P18710_001
GSMUA_Achr3P25880_001
GSMUA_Achr6P00950_001
GSMUA_Achr6P23860_001
GSMUA_Achr7P09190_001
GSMUA_Achr8P05490_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22070.1	GSMUA_Achr2P16670_001	AT1G64280.1	10659709
AT1G22070.1	GSMUA_Achr3P25880_001	AT1G64280.1	10659709
AT1G22070.1	GSMUA_Achr6P00950_001	AT1G64280.1	10659709
AT1G22070.1	GSMUA_Achr7P09190_001	AT1G64280.1	10659709
AT1G22070.1	GSMUA_Achr8P05490_001	AT1G64280.1	10659709
AT1G22070.1	GSMUA_AchrUn_...	AT1G64280.1	10659709
AT1G22070.1	GSMUA_Achr2P16670_001	AT1G64280.1	10662863
AT1G22070.1	GSMUA_Achr3P25880_001	AT1G64280.1	10662863
AT1G22070.1	GSMUA_Achr6P00950_001	AT1G64280.1	10662863
AT1G22070.1	GSMUA_Achr7P09190_001	AT1G64280.1	10662863
AT1G22070.1	GSMUA_Achr8P05490_001	AT1G64280.1	10662863
AT1G22070.1	GSMUA_AchrUn_...	AT1G64280.1	10662863
AT1G22070.1	GSMUA_Achr2P16670_001	AT1G64280.1	15634206
AT1G22070.1	GSMUA_Achr3P25880_001	AT1G64280.1	15634206
AT1G22070.1	GSMUA_Achr6P00950_001	AT1G64280.1	15634206
AT1G22070.1	GSMUA_Achr7P09190_001	AT1G64280.1	15634206
AT1G22070.1	GSMUA_Achr8P05490_001	AT1G64280.1	15634206
AT1G22070.1	GSMUA_AchrUn_...	AT1G64280.1	15634206
AT1G22070.1	GSMUA_Achr2P16670_001	AT1G64280.1	21798944
AT1G22070.1	GSMUA_Achr3P25880_001	AT1G64280.1	21798944
AT1G22070.1	GSMUA_Achr6P00950_001	AT1G64280.1	21798944
AT1G22070.1	GSMUA_Achr7P09190_001	AT1G64280.1	21798944
AT1G22070.1	GSMUA_Achr8P05490_001	AT1G64280.1	21798944
AT1G22070.1	GSMUA_AchrUn_...	AT1G64280.1	21798944
AT1G22070.1	GSMUA_Achr10P...	AT3G02000.1	19218396
AT1G22070.1	GSMUA_Achr3P18710_001	AT3G02000.1	19218396
AT1G22070.1	GSMUA_Achr6P23860_001	AT3G02000.1	19218396
AT1G22070.1	GSMUA_AchrUn_...	AT3G02000.1	19218396
AT1G77920.1	GSMUA_Achr2P16670_001	AT1G64280.1	10662863
AT1G77920.1	GSMUA_Achr3P25880_001	AT1G64280.1	10662863
AT1G77920.1	GSMUA_Achr6P00950_001	AT1G64280.1	10662863
AT1G77920.1	GSMUA_Achr7P09190_001	AT1G64280.1	10662863
AT1G77920.1	GSMUA_Achr8P05490_001	AT1G64280.1	10662863
AT1G77920.1	GSMUA_AchrUn_...	AT1G64280.1	10662863
AT1G77920.1	GSMUA_Achr2P16670_001	AT1G64280.1	15634206
AT1G77920.1	GSMUA_Achr3P25880_001	AT1G64280.1	15634206
AT1G77920.1	GSMUA_Achr6P00950_001	AT1G64280.1	15634206
AT1G77920.1	GSMUA_Achr7P09190_001	AT1G64280.1	15634206
AT1G77920.1	GSMUA_Achr8P05490_001	AT1G64280.1	15634206
AT1G77920.1	GSMUA_AchrUn_...	AT1G64280.1	15634206
AT1G77920.1	GSMUA_Achr10P...	AT3G02000.1	19218396
AT1G77920.1	GSMUA_Achr3P18710_001	AT3G02000.1	19218396
AT1G77920.1	GSMUA_Achr6P23860_001	AT3G02000.1	19218396
AT1G77920.1	GSMUA_AchrUn_...	AT3G02000.1	19218396

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	nucleus	74.52	76.84
GSMUA_Achr10P...	Banana	nucleus	70.96	73.79
VIT_07s0031g01320.t01	Wine grape	nucleus	69.59	72.78
VIT_18s0001g04470.t01	Wine grape	nucleus	67.67	68.04
KRG97639	Soybean	nucleus	66.85	67.4
KRH31239	Soybean	nucleus	66.3	66.48
Bra015646.1-P	Field mustard	nucleus	60.0	64.6
AT5G10030.3	Thale cress	nucleus	64.11	64.29
AT5G65210.2	Thale cress	nucleus	64.11	63.59
CDX85782	Canola	nucleus	62.74	63.26
Bra028604.1-P	Field mustard	nucleus	62.74	63.26
Bra024366.1-P	Field mustard	nucleus	63.56	63.22
CDY08810	Canola	nucleus	63.56	63.22
Solyc12g056860.1.1	Tomato	nucleus	59.45	62.36
CDY40074	Canola	nucleus	61.64	62.15
CDY14552	Canola	nucleus	62.47	62.13
CDX68037	Canola	nucleus	62.74	61.73
AT1G77920.1	Thale cress	nucleus	62.19	61.68
Bra009063.1-P	Field mustard	nucleus	61.37	61.54
CDX69866	Canola	nucleus	61.37	61.54
KRH59415	Soybean	nucleus	61.92	61.08
CDY33975	Canola	nucleus	61.64	60.81
KRH43266	Soybean	nucleus	63.01	60.69
PGSC0003DMT400033308	Potato	nucleus	59.18	60.67
PGSC0003DMT400043651	Potato	nucleus	60.0	60.66
CDY37811	Canola	nucleus	61.37	60.54
Solyc04g054320.2.1	Tomato	nucleus	61.37	60.54
Bra031871.1-P	Field mustard	nucleus	61.37	60.54
Solyc04g011670.2.1	Tomato	nucleus	61.92	60.43
PGSC0003DMT400070884	Potato	nucleus	59.73	60.39
Solyc04g072460.2.1	Tomato	nucleus	59.73	60.39
Zm00001d016312_P001	Maize	cytosol	15.34	60.22
CDY21625	Canola	nucleus	59.73	59.89
GSMUA_Achr8P05800_001	Banana	nucleus	53.42	58.73
CDY18683	Canola	cytosol	59.45	58.33
CDX81273	Canola	nucleus	61.37	57.58
AT1G22070.1	Thale cress	nucleus	60.55	57.55
Bra031364.1-P	Field mustard	nucleus	59.18	57.14
GSMUA_Achr3P25020_001	Banana	nucleus	51.51	56.63
KRH63045	Soybean	cytosol	14.52	56.38
Bra016389.1-P	Field mustard	nucleus	56.71	56.25
CDY41495	Canola	nucleus	56.71	56.1
Os04t0637000-01	Rice	nucleus	60.82	55.92
CDY38253	Canola	nucleus	58.9	55.84
KRH16629	Soybean	nucleus	56.44	55.68
KRH18838	Soybean	nucleus	56.16	55.41
CDY38843	Canola	nucleus	56.16	55.41
KXG27222	Sorghum	nucleus	61.64	55.15
KRH53141	Soybean	nucleus	53.42	54.93
Bra037809.1-P	Field mustard	nucleus	58.63	54.59
PGSC0003DMT400016235	Potato	nucleus	57.26	53.32
KRH64780	Soybean	nucleus	52.05	52.49
Zm00001d026398_P006	Maize	nucleus	58.9	52.18
CDX88399	Canola	nucleus	61.1	51.86
CDY21336	Canola	nucleus	59.18	51.67
CDX87494	Canola	nucleus	61.64	50.68
KXG38496	Sorghum	nucleus	42.74	50.16
TraesCS2D01G529000.1	Wheat	nucleus	57.81	49.65
TraesCS2A01G526300.1	Wheat	nucleus	56.99	49.64
Zm00001d024160_P003	Maize	nucleus	57.26	49.29
TraesCS2B01G556600.1	Wheat	nucleus	58.08	48.74
GSMUA_Achr11P...	Banana	cytosol	32.05	48.35
Zm00001d002143_P002	Maize	cytosol	55.62	46.24
GSMUA_Achr10P...	Banana	nucleus	56.71	45.3
GSMUA_Achr9P27700_001	Banana	nucleus	46.3	45.07
Zm00001d041428_P001	Maize	cytosol	18.9	44.23
Os08t0176900-01	Rice	nucleus	46.85	43.96
GSMUA_Achr9P15550_001	Banana	nucleus	51.51	43.82
Bra037374.1-P	Field mustard	nucleus	37.26	43.31
KRG92164	Soybean	nucleus	27.67	42.98
GSMUA_Achr11P...	Banana	nucleus	55.07	42.05
GSMUA_Achr3P11150_001	Banana	nucleus	46.58	41.06
KRH34622	Soybean	cytosol	25.75	40.69
OQU79985	Sorghum	golgi, vacuole	56.99	40.31
GSMUA_AchrUn_...	Banana	nucleus	52.6	39.02
GSMUA_Achr5P26200_001	Banana	nucleus	42.47	38.18
GSMUA_Achr2P06770_001	Banana	nucleus	48.49	37.03
GSMUA_Achr11P...	Banana	nucleus	47.95	35.57
CDX79240	Canola	nucleus	55.07	35.26
GSMUA_Achr8P21670_001	Banana	nucleus	55.89	35.05
GSMUA_Achr10P...	Banana	nucleus	45.21	34.96
GSMUA_Achr3P22700_001	Banana	nucleus	46.3	33.4
HORVU2Hr1G116090.2	Barley	cytosol	38.63	33.33
GSMUA_Achr9P20200_001	Banana	plastid	46.03	30.71
GSMUA_Achr11P...	Banana	nucleus	18.9	22.33

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr5G16630_001
EnsemblPlants:GSMUA_Achr5P16630_001	EnsemblPlants:GSMUA_Achr5T16630_001	InterPro:IPR004827	InterPro:IPR025422	UniProt:M0SZ42	PFAM:PF00170
PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF180
SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI0002958DE9	InterPro:bZIP	SEG:seg

Description

Transcription factor TGA1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G16630_001]

Coordinates

chr5:-:15110713..15114583

Molecular Weight (calculated)

40679.3 Da

IEP (calculated)

7.782

GRAVY (calculated)

-0.457

Length

365 amino acids

Sequence
(BLAST)

001: MSSASTQFAS PRKMGIFEPN HQIGMWGDSF KADSSQNTGA SSIVEAEIKL DNRLEDSPHT MLGPSKKYDQ EANKPTDKVL RRLAQNREAA RKSRLRKKAY
101: VQQLESSRLK LAQIEQQLDQ AKQQGVYIGG NLGESTLGLS GSVNSGVTAF EMEYGHWVEE QNRQTSELRA ALQAHVSDIE LRMLVESALS HYDNLFHIKA
201: IAAKSDVFYL MSGMWKTAAE RFFLWIGGFR PSELLKVLSP QLDPLTEQQV ISVCNLQQSS QQAEDALSQG MDKLQQNLAE TLTSDSSGTS GVSDYMGQMV
301: NAMGKLEALV SFVNQADHLR QQTLQQMYKI LTVRQAARGL LALGDYFQRL RALSSLWAAR PREPA

Best Arabidopsis Sequence Match ( AT5G65210.5 )
(BLAST)

001: MNSTSTHFVP PRRVGIYEPV HQFGMWGESF KSNISNGTMN TPNHIIIPNN QKLDNNVSED TSHGTAGTPH MFDQEASTSR HPDKIQRRLA QNREAARKSR
101: LRKKAYVQQL ETSRLKLIQL EQELDRARQQ GFYVGNGIDT NSLGFSETMN PGIAAFEMEY GHWVEEQNRQ ICELRTVLHG HINDIELRSL VENAMKHYFE
201: LFRMKSSAAK ADVFFVMSGM WRTSAERFFL WIGGFRPSDL LKVLLPHFDV LTDQQLLDVC NLKQSCQQAE DALTQGMEKL QHTLADCVAA GQLGEGSYIP
301: QVNSAMDRLE ALVSFVNQAD HLRHETLQQM YRILTTRQAA RGLLALGEYF QRLRALSSSW ATRHREPT

Arabidopsis Description

TGA1Transcription factor TGA1 [Source:UniProtKB/Swiss-Prot;Acc:Q39237]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.