Factsheet for GSMUA_Achr9P20200_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
mitochondrion 2
peroxisome 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P11150_001	Banana	nucleus	54.3	71.74
GSMUA_Achr9P27700_001	Banana	nucleus	48.45	70.67
PGSC0003DMT400029743	Potato	nucleus, plastid	44.42	63.95
CDY71150	Canola	nucleus, plastid	23.03	63.64
VIT_08s0007g06160.t01	Wine grape	nucleus	52.83	58.86
KRH67029	Soybean	nucleus	52.1	58.04
KRG95350	Soybean	nucleus	52.1	58.04
CDY70396	Canola	mitochondrion	22.12	57.89
Bra009233.1-P	Field mustard	cytosol	29.62	57.86
Solyc10g078670.1.1	Tomato	nucleus	49.54	55.65
KRH71904	Soybean	nucleus	48.63	54.96
PGSC0003DMT400060865	Potato	nucleus	46.25	54.88
GSMUA_Achr8P05800_001	Banana	nucleus	33.09	54.52
Solyc10g080410.1.1	Tomato	nucleus	45.7	54.47
CDX98963	Canola	nucleus	44.79	54.32
CDX70061	Canola	nucleus	44.79	54.32
GSMUA_Achr3P25020_001	Banana	nucleus	32.91	54.22
AT5G06839.3	Thale cress	nucleus	44.97	53.48
Zm00001d020938_P002	Maize	nucleus	47.35	53.29
Bra005914.1-P	Field mustard	nucleus	41.5	52.3
KXG35912	Sorghum	nucleus	47.71	52.2
CDY70714	Canola	nucleus	33.46	51.99
CDY70235	Canola	nucleus	34.55	51.92
GSMUA_Achr11P...	Banana	cytosol	22.67	51.24
KRH32997	Soybean	nucleus	48.08	50.87
Os09t0489500-02	Rice	nucleus	46.62	48.76
Zm00001d006027_P002	Maize	nucleus	44.42	48.31
TraesCS5A01G265600.1	Wheat	nucleus	43.88	46.33
GSMUA_Achr5P16630_001	Banana	nucleus	30.71	46.03
TraesCS5D01G273500.1	Wheat	nucleus	43.51	45.95
TraesCS5B01G265300.1	Wheat	nucleus	44.06	45.82
GSMUA_AchrUn_...	Banana	nucleus	29.25	45.2
GSMUA_Achr10P...	Banana	nucleus	28.34	44.16
HORVU5Hr1G073410.1	Barley	nucleus	44.24	42.68
GSMUA_Achr10P...	Banana	nucleus	35.28	42.23
GSMUA_Achr2P06770_001	Banana	nucleus	36.75	42.05
GSMUA_Achr9P15550_001	Banana	nucleus	32.91	41.96
GSMUA_Achr10P...	Banana	nucleus	35.1	40.68
GSMUA_Achr11P...	Banana	nucleus	34.19	39.12
GSMUA_Achr11P...	Banana	nucleus	34.73	38.62
GSMUA_Achr5P26200_001	Banana	nucleus	27.79	37.44
GSMUA_AchrUn_...	Banana	nucleus	33.64	37.4
GSMUA_Achr3P22700_001	Banana	nucleus	32.91	35.57
GSMUA_Achr8P21670_001	Banana	nucleus	33.82	31.79
GSMUA_Achr11P...	Banana	nucleus	14.99	26.54

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr9G20200_001
EnsemblPlants:GSMUA_Achr9P20200_001	EnsemblPlants:GSMUA_Achr9T20200_001	InterPro:IPR004827	InterPro:IPR025422	UniProt:M0U1X9	PFAM:PF00170
PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF241
SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI000295C559	InterPro:bZIP	SEG:seg

Description

transcription factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G20200_001]

Coordinates

chr9:-:23607044..23617137

Molecular Weight (calculated)

62334.4 Da

IEP (calculated)

9.978

GRAVY (calculated)

-0.413

Length

547 amino acids

Sequence
(BLAST)

001: MTIWSTYKSV NPPLGSGHLW PWRSRWSVGS NFQLVHGVPC LRGIVRLGGH FTNLPPVLSV SKQPDSRLSS LHVFGKTATI AGSSRLILRT PGRGRVREKK
101: RGRRIGFLIP FWRRREMANE RNKEAGAYDL GELDQALFFS LDEQDHSISG QEQRRDCLDS FRKKTLNIFP SQPMHVQTST KGGKSLASPA TSGSKKSSDQ
201: TMELGNSPND LPELPEKSSK DTKGPRQQIL KRVHLKLPIY ILPLYPLQIK VLSNCVFCFL CEQTLRRLAQ NREAARKSRL RKKAYIQQLE SSRNKLSQLE
301: QEIQRARGQV TITLLEDQGL PTFAGGLNAA VFDMEYTRWL EEHHRLMCEL RAAVEEQQPE NKLQMFVDSC LAHYDHMAYL KSIVTKSDVF HLISGVWMTP
401: AERCFMWMGG FRPSELIKML SRHIEPLTEQ QILGVCGLQQ STQETEEALS QGLEALNLSL SDTITSDALS CLSHMDNYMG QMAVAVNKLA TLEGFIRQAD
501: NLRQHTLHRL YQILTTRQMA RCLLAIAEYF HRLRALSSLW LARPRHE

Best Arabidopsis Sequence Match ( AT5G06839.3 )
(BLAST)

001: MQGHHQNHHQ HLSSSSATSS HGNFMNKDGY DIGEIDPSLF LYLDGQGHHD PPSTAPSPLH HHHTTQNLAM RPPTSTLNIF PSQPMHIEPP PSSTHNTDNT
101: RLVPAAQPSG STRPASDPSM DLTNHSQFHQ PPQGSKSIKK EGNRKGLASS DHDIPKSSDP KTLRRLAQNR EAARKSRLRK KAYVQQLESC RIKLTQLEQE
201: IQRARSQGVF FGGSLIGGDQ QQGGLPIGPG NISSEAAVFD MEYARWLEEQ QRLLNELRVA TQEHLSENEL RMFVDTCLAH YDHLINLKAM VAKTDVFHLI
301: SGAWKTPAER CFLWMGGFRP SEIIKVIVNQ IEPLTEQQIV GICGLQQSTQ EAEEALSQGL EALNQSLSDS IVSDSLPPAS APLPPHLSNF MSHMSLALNK
401: LSALEGFVLQ ADNLRHQTIH RLNQLLTTRQ EARCLLAVAE YFHRLQALSS LWLARPRQDG

Arabidopsis Description

TGA10Transcription factor TGA10 [Source:UniProtKB/Swiss-Prot;Acc:E3VNM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.