Factsheet for GSMUA_Achr10P10300_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	37.5	73.14
GSMUA_Achr11P...	Banana	nucleus	69.28	66.46
GSMUA_Achr5P26200_001	Banana	nucleus	54.03	62.81
GSMUA_Achr2P06770_001	Banana	nucleus	60.38	59.62
GSMUA_Achr3P22700_001	Banana	nucleus	63.35	59.09
GSMUA_Achr8P05800_001	Banana	nucleus	39.41	56.02
GSMUA_Achr3P25020_001	Banana	nucleus	39.41	56.02
Solyc11g068370.1.1	Tomato	nucleus	44.07	55.91
PGSC0003DMT400067782	Potato	nucleus	37.5	53.8
Bra031622.1-P	Field mustard	nucleus	47.25	52.1
PGSC0003DMT400018306	Potato	nucleus	53.39	51.64
CDY22689	Canola	nucleus	46.82	51.64
Os05t0443900-01	Rice	nucleus	52.33	51.03
VIT_06s0080g00360.t01	Wine grape	nucleus	54.03	51.0
Solyc06g074320.2.1	Tomato	nucleus	53.81	50.7
Bra018634.1-P	Field mustard	nucleus	50.85	50.53
CDX93571	Canola	nucleus	51.06	50.42
CDX95068	Canola	nucleus	50.85	50.21
AT1G08320.4	Thale cress	nucleus	50.85	49.9
KRH22685	Soybean	nucleus	51.69	49.8
KRH26635	Soybean	nucleus	51.48	49.8
KRH30432	Soybean	nucleus	51.69	49.49
KRH25227	Soybean	nucleus	52.33	49.3
KXG33735	Sorghum	nucleus	54.24	48.03
CDY06309	Canola	nucleus	49.15	47.93
Os01t0859500-01	Rice	nucleus	54.66	47.87
GSMUA_Achr9P27700_001	Banana	nucleus	37.5	47.2
GSMUA_AchrUn_...	Banana	nucleus	35.17	46.89
GSMUA_Achr3P11150_001	Banana	nucleus	39.83	45.41
GSMUA_Achr10P...	Banana	nucleus	33.69	45.3
TraesCS1D01G276100.2	Wheat	nucleus	50.42	45.25
TraesCS1B01G285800.1	Wheat	nucleus	50.42	45.25
GSMUA_Achr5P16630_001	Banana	nucleus	34.96	45.21
HORVU1Hr1G073870.2	Barley	nucleus	50.0	45.12
TraesCS1A01G276600.2	Wheat	nucleus	50.21	45.06
OQU78097	Sorghum	nucleus	49.36	44.64
Zm00001d012294_P009	Maize	nucleus	52.12	44.32
Zm00001d038296_P001	Maize	nucleus	48.31	43.93
TraesCS3B01G404800.2	Wheat	nucleus	52.12	42.93
TraesCS3D01G365200.3	Wheat	nucleus	52.33	42.59
TraesCS3A01G372400.2	Wheat	nucleus	51.69	42.58
GSMUA_Achr10P...	Banana	nucleus	41.1	42.45
GSMUA_Achr9P15550_001	Banana	nucleus	38.56	42.42
GSMUA_Achr11P...	Banana	nucleus	41.74	41.21
Zm00001d042777_P006	Maize	nucleus	54.45	39.54
GSMUA_AchrUn_...	Banana	nucleus	40.25	38.62
GSMUA_Achr9P20200_001	Banana	plastid	40.68	35.1
GSMUA_Achr11P...	Banana	nucleus	22.88	34.95
GSMUA_Achr8P21670_001	Banana	nucleus	40.47	32.82
HORVU3Hr1G084340.10	Barley	nucleus	36.23	30.05

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr10G10300_001
EnsemblPlants:GSMUA_Achr10P10300_001	EnsemblPlants:GSMUA_Achr10T10300_001	InterPro:IPR004827	InterPro:IPR025422	UniProt:M0RH06	PFAM:PF00170
PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF257
SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI00029660E7	InterPro:bZIP	SEG:seg

Description

transcription factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G10300_001]

Coordinates

chr10:-:19874063..19881209

Molecular Weight (calculated)

52042.9 Da

IEP (calculated)

6.737

GRAVY (calculated)

-0.340

Length

472 amino acids

Sequence
(BLAST)

001: MDLCCPNSDQ EGAAYFGELE KALMQGVDGI RETEEDTKGG PSSLFPFSFG SLPTLTTSTT DTSWPATLEI FPSWPMRSQQ TPRVRSCLLD LGSDSTASRR
101: ASSDQSADQE QAMMTMMIAG DGSITGTTPT SQLASQEKVP KMTGSAAGKD GKKLDAKTLR RLAQNREAAR KSRLRKKAYV QQLESSRIRL QQLEHDLQRA
201: RSQGLFLGVA GSANGAVTSA FRAAGAAMFD VEYARWLDEN CKHMSDLRGA MQAHLPDGNL GVIVDQCIAN YDDLFRLKEI VAKSDVFHLL NGTWMTPAER
301: CFLWMGGFRP SELLEILMPH LDPLTEQQLL VIGNLRLSSQ QAEEALSQGL EQLHRSLSDT VTGDSLSDGV DVGNYMGHMA LALGKLANLE GFVRQADNLR
401: QQTLHQLRRN LTIKQAARCF LAIGEYYTRL RALSSLWASR PRQSLIVHDS VVSSATDLQI VHQPLQNHFT SF

Best Arabidopsis Sequence Match ( AT1G08320.3 )
(BLAST)

001: MANHRMSEAT NHNHNHHLPY SLIHGLNNNH PSSGFINQDG SSSFDFGELE EAIVLQGVKY RNEEAKPPLL GGGGGATTLE MFPSWPIRTH QTLPTESSKS
101: GGESSDSGSA NFSGKAESQQ PESPMSSKHH LMLQPHHNNM ANSSSTSGLP STSRTLAPPK PSEDKRKATT SGKQLDAKTL RRLAQNREAA RKSRLRKKAY
201: VQQLESSRIK LSQLEQELQR ARSQGLFMGG CGPPGPNITS GAAIFDMEYG RWLEDDNRHM SEIRTGLQAH LSDNDLRLIV DGYIAHFDEI FRLKAVAAKA
301: DVFHLIIGTW MSPAERCFIW MAGFRPSDLI KILVSQMDLL TEQQLMGIYS LQHSSQQAEE ALSQGLEQLQ QSLIDTLAAS PVIDGMQQMA VALGKISNLE
401: GFIRQADNLR QQTVHQLRRI LTVRQAARCF LVIGEYYGRL RALSSLWLSR PRETLMSDET SCQTTTDLQI VQSSRNHFSN F

Arabidopsis Description

TGA9Transcription factor TGA9 [Source:UniProtKB/Swiss-Prot;Acc:Q93XM6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.