Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P05800_001 | Banana | nucleus | 92.17 | 92.17 |
| PGSC0003DMT400024428 | Potato | nucleus | 83.13 | 85.19 |
| Solyc11g064950.1.1 | Tomato | nucleus | 83.13 | 85.19 |
| KRH36324 | Soybean | nucleus | 84.64 | 84.64 |
| AT5G06950.5 | Thale cress | nucleus | 79.82 | 80.3 |
| Solyc01g008730.2.1 | Tomato | nucleus | 78.92 | 80.12 |
| Bra034767.1-P | Field mustard | nucleus | 79.22 | 79.46 |
| CDY08443 | Canola | nucleus | 78.61 | 78.85 |
| Bra009241.1-P | Field mustard | nucleus | 73.49 | 78.71 |
| CDY00762 | Canola | nucleus | 78.01 | 78.25 |
| CDX70053 | Canola | nucleus | 76.81 | 77.98 |
| Bra001443.1-P | Field mustard | nucleus | 77.71 | 77.95 |
| CDX73830 | Canola | nucleus | 77.71 | 77.95 |
| CDX98971 | Canola | nucleus | 76.81 | 77.74 |
| CDY50562 | Canola | nucleus | 78.01 | 77.54 |
| Bra038705.1-P | Field mustard | nucleus | 78.01 | 77.54 |
| CDY52616 | Canola | nucleus | 77.71 | 77.48 |
| AT5G06960.1 | Thale cress | nucleus | 74.7 | 75.15 |
| CDY05010 | Canola | nucleus | 73.19 | 74.54 |
| PGSC0003DMT400026710 | Potato | mitochondrion | 39.46 | 74.43 |
| CDY14061 | Canola | nucleus | 72.89 | 74.23 |
| Bra028713.1-P | Field mustard | nucleus | 72.89 | 74.23 |
| AT3G12250.4 | Thale cress | nucleus | 78.92 | 73.8 |
| CDY42138 | Canola | nucleus | 68.98 | 70.68 |
| KRH66777 | Soybean | nucleus | 61.45 | 70.34 |
| GSMUA_Achr10P... | Banana | nucleus | 92.17 | 66.96 |
| PGSC0003DMT400060922 | Potato | nucleus | 53.01 | 65.67 |
| Solyc10g080780.1.1 | Tomato | cytosol | 51.81 | 63.94 |
| VIT_08s0007g05170.t01 | Wine grape | nucleus | 86.45 | 63.64 |
| KRG93068 | Soybean | nucleus | 84.64 | 63.29 |
| GSMUA_Achr11P... | Banana | nucleus | 90.96 | 63.18 |
| VIT_13s0084g00660.t01 | Wine grape | nucleus | 87.35 | 61.83 |
| PGSC0003DMT400060926 | Potato | nucleus | 79.22 | 60.74 |
| KRH20680 | Soybean | nucleus | 84.04 | 59.49 |
| Solyc10g080770.1.1 | Tomato | nucleus | 79.22 | 58.44 |
| KRG95103 | Soybean | nucleus | 80.42 | 58.17 |
| KRH66771 | Soybean | nucleus | 80.12 | 57.83 |
| KRH13334 | Soybean | nucleus | 83.73 | 55.94 |
| GSMUA_Achr9P15550_001 | Banana | nucleus | 71.69 | 55.48 |
| GSMUA_AchrUn_... | Banana | nucleus | 80.72 | 54.47 |
| GSMUA_Achr5P16630_001 | Banana | nucleus | 56.63 | 51.51 |
| GSMUA_AchrUn_... | Banana | nucleus | 54.22 | 50.85 |
| GSMUA_Achr10P... | Banana | nucleus | 53.61 | 50.71 |
| GSMUA_Achr11P... | Banana | cytosol | 36.75 | 50.41 |
| GSMUA_Achr9P27700_001 | Banana | nucleus | 55.72 | 49.33 |
| GSMUA_Achr8P21670_001 | Banana | nucleus | 84.64 | 48.28 |
| GSMUA_Achr3P11150_001 | Banana | nucleus | 56.93 | 45.65 |
| GSMUA_Achr5P26200_001 | Banana | nucleus | 51.81 | 42.36 |
| GSMUA_Achr2P06770_001 | Banana | nucleus | 57.83 | 40.17 |
| GSMUA_Achr10P... | Banana | nucleus | 56.02 | 39.41 |
| GSMUA_Achr11P... | Banana | nucleus | 56.63 | 38.21 |
| GSMUA_Achr3P22700_001 | Banana | nucleus | 53.61 | 35.18 |
| GSMUA_Achr9P20200_001 | Banana | plastid | 54.22 | 32.91 |
| GSMUA_Achr11P... | Banana | nucleus | 20.78 | 22.33 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | MapMan:15.5.4.7.1 | MapMan:26.8.3.1.2 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSMUA_Achr3G25020_001 | EnsemblPlants:GSMUA_Achr3P25020_001 | EnsemblPlants:GSMUA_Achr3T25020_001 | InterPro:IPR004827 | InterPro:IPR025422 | UniProt:M0SHL8 |
| PFAM:PF07716 | PFAM:PF14144 | ScanProsite:PS00036 | PFscan:PS50217 | PFscan:PS51806 | PANTHER:PTHR22952 |
| PANTHER:PTHR22952:SF244 | SMART:SM00338 | SUPFAM:SSF57959 | InterPro:TGA_domain | UniParc:UPI000294DDF7 | InterPro:bZIP |
| SEG:seg | : | : | : | : | : |
Description
Transcription factor HBP-1b(c1) (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr3G25020_001]
Coordinates
chr3:-:25359716..25364623
Molecular Weight (calculated)
37052.1 Da
IEP (calculated)
8.814
GRAVY (calculated)
-0.514
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MADVSPRTDT STDVDTDDKD KRLERGQHAV VAASDSSDRS KDKTLDQKTV RRLAQNREAA RKSRLRKKAY VQQLESSRLK LTQLEQELQR ARQQGIFISG
101: SGDQSHAMGG NGALAFDVEY ARWLEEHNRQ INELRSAVNA HASENDLCVI VDGVMAQYDE IFRLKGIAAK ADVFHILSGM WKTPAERCFL WLGGFRSSEL
201: LKLLANQLEP LTEQQMMGIC NLQQSSQQAE DALSQGMEAL QQSLAETLAG SLAPSGSSGN VANYMGQMAM AMGKLGTLEN FLRQADNLRQ QTLQQMHRIL
301: TTRQSARALL AIHGYFSRLR ALSSIWLARP RD
101: SGDQSHAMGG NGALAFDVEY ARWLEEHNRQ INELRSAVNA HASENDLCVI VDGVMAQYDE IFRLKGIAAK ADVFHILSGM WKTPAERCFL WLGGFRSSEL
201: LKLLANQLEP LTEQQMMGIC NLQQSSQQAE DALSQGMEAL QQSLAETLAG SLAPSGSSGN VANYMGQMAM AMGKLGTLEN FLRQADNLRQ QTLQQMHRIL
301: TTRQSARALL AIHGYFSRLR ALSSIWLARP RD
001: MADTSSRTDV STDGDTDHRD LGSDRGHMHA AASDSSDRSK DKLDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSSG
101: DQAHSTGGNG ALAFDAEHSR WLEEKNRQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSDNVA SYMGQMAMAM GQLGTLEGFI RQADNLRLQT LQQMLRVLTT
301: RQSARALLAI HDYSSRLRAL SSLWLARPRE
101: DQAHSTGGNG ALAFDAEHSR WLEEKNRQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSDNVA SYMGQMAMAM GQLGTLEGFI RQADNLRLQT LQQMLRVLTT
301: RQSARALLAI HDYSSRLRAL SSLWLARPRE
Arabidopsis Description
TGA6TGACG motif-binding factor 6 [Source:UniProtKB/TrEMBL;Acc:F4J8P7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.