Factsheet for Solyc10g080770.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060926	Potato	nucleus	96.0	99.77
GSMUA_Achr3P25020_001	Banana	nucleus	58.44	79.22
HORVU3Hr1G042830.1	Barley	cytosol, mitochondrion, nucleus, plastid	26.22	79.19
GSMUA_Achr8P05800_001	Banana	nucleus	58.22	78.92
Os01t0279900-01	Rice	nucleus	57.33	78.42
Solyc11g064950.1.1	Tomato	nucleus	56.44	78.4
EES02530	Sorghum	nucleus	56.67	77.27
TraesCS3A01G190700.2	Wheat	nucleus	56.67	76.81
TraesCS3B01G220400.2	Wheat	nucleus	56.67	76.81
HORVU3Hr1G042790.4	Barley	nucleus	56.22	76.44
TraesCS3D01G194800.2	Wheat	nucleus	56.22	76.2
Os03t0318600-01	Rice	nucleus	56.0	75.68
KXG39494	Sorghum	nucleus	56.22	75.52
KXG36997	Sorghum	nucleus	55.78	75.38
Zm00001d022542_P002	Maize	nucleus	55.56	75.08
TraesCS4B01G178600.1	Wheat	nucleus	55.56	74.85
Os07t0687700-01	Rice	nucleus	55.56	74.85
HORVU4Hr1G052330.3	Barley	nucleus	55.56	74.85
TraesCS2B01G113200.2	Wheat	nucleus	55.78	74.7
TraesCS2D01G096800.2	Wheat	nucleus	55.78	74.7
TraesCS4D01G180200.4	Wheat	nucleus	55.56	74.63
TraesCS4A01G126300.2	Wheat	nucleus	55.56	74.63
Solyc01g008730.2.1	Tomato	nucleus	54.22	74.62
TraesCS2A01G097500.2	Wheat	nucleus	55.56	74.4
VIT_08s0007g05170.t01	Wine grape	nucleus	72.0	71.84
Solyc10g080780.1.1	Tomato	cytosol	42.89	71.75
HORVU2Hr1G016580.5	Barley	nucleus	53.56	71.51
KRH66777	Soybean	nucleus	44.67	69.31
KXG22247	Sorghum	nucleus	50.22	68.07
KRG95103	Soybean	nucleus	66.89	65.58
KRH66771	Soybean	nucleus	66.22	64.78
GSMUA_Achr10P...	Banana	nucleus	65.56	64.55
Os05t0492000-00	Rice	nucleus	46.0	62.73
EES03778	Sorghum	nucleus	65.11	62.61
GSMUA_Achr11P...	Banana	nucleus	66.44	62.55
Zm00001d008225_P001	Maize	nucleus	58.22	62.38
HORVU3Hr1G079010.5	Barley	nucleus	65.78	62.05
TraesCS3A01G334100.1	Wheat	nucleus	65.33	61.89
TraesCS3D01G327600.1	Wheat	nucleus	65.33	61.64
TraesCS3B01G365100.1	Wheat	nucleus	64.89	61.22
Zm00001d028936_P001	Maize	nucleus	52.67	60.61
Zm00001d010658_P001	Maize	nucleus	46.22	60.29
TraesCS1A01G096300.1	Wheat	nucleus	42.89	57.61
Zm00001d043153_P001	Maize	nucleus	53.78	57.35
TraesCS1B01G127400.1	Wheat	nucleus	42.67	56.47
TraesCS1D01G105300.1	Wheat	nucleus	42.44	56.34
Zm00001d012553_P003	Maize	nucleus	56.67	54.26
Solyc05g009660.2.1	Tomato	nucleus	57.56	53.51
HORVU1Hr1G068220.1	Barley	nucleus	40.44	53.06
Solyc12g056860.1.1	Tomato	nucleus	39.11	50.57
Solyc04g011670.2.1	Tomato	nucleus	42.0	50.53
Os01t0808100-01	Rice	nucleus	40.67	50.27
Solyc04g072460.2.1	Tomato	nucleus	39.78	49.58
Solyc11g068370.1.1	Tomato	nucleus	39.33	47.58
Solyc04g054320.2.1	Tomato	nucleus	37.33	45.41
Solyc06g074320.2.1	Tomato	nucleus	47.33	42.52
HORVU0Hr1G032230.4	Barley	nucleus	31.11	39.89
Solyc10g080410.1.1	Tomato	nucleus	40.44	39.65
Solyc10g078670.1.1	Tomato	nucleus	42.44	39.22

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	MapMan:26.8.3.1.2	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR004827	InterPro:IPR025422	UniProt:K4D2W7	PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036
PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF244	SMART:SM00338	SUPFAM:SSF57959
EnsemblPlantsGene:Solyc10g080770.1	EnsemblPlants:Solyc10g080770.1.1	InterPro:TGA_domain	UniParc:UPI000276960C	InterPro:bZIP	SEG:seg

Description

No Description!

Coordinates

chr10:+:61968589..61977455

Molecular Weight (calculated)

49587.1 Da

IEP (calculated)

8.439

GRAVY (calculated)

-0.620

Length

450 amino acids

Sequence
(BLAST)

001: MPSFISQIPV SKNHMGTEGN NTNTSRMSEF GVLEQYLGFR IGDGVNVNRS PLFNSTSAAN PAVGFDVSGT INRNLAPSNT SLSTAAPGSH VIQLQSNLVP
101: AAGTHPENWG ESNMADSGSR TDTSTDMDGD DRNQRDSRIE TGQSRAIAAS DSSDKSKEKV LDQKTLRRLA QNREAARKSR LRKKAYVQQL ENSRLKLSQL
201: EQDLQRARQQ GKYISNMADQ SNGAGASGTL AFDAEYSRWL EEHNKHINEL RTAVNSHASD PELRSIVNNV TAHYDEVFRV KGNAAKADVF HVLSGMWKTP
301: AERCFMWIGG FRPSELLKLL VNQLEPLTEQ QLAGIYNLQQ SSHQAEDALS QGMEALQQSL AETLANGSPA TEGSSGDVAN YMGQMAMAMG KLGTLEGFLR
401: QADNLRQQTL QQMHRILTTR QSARALLAIS EYFSRLRALS SLWLARPREQ

Best Arabidopsis Sequence Match ( AT3G12250.1 )
(BLAST)

001: MADTSSRTDV STDGDTDHRD LGSDRGHMHA AASDSSDRSK DKLDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSSG
101: DQAHSTGGNG ALAFDAEHSR WLEEKNRQMN ELRSALNAHA GDTELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQVMGINSL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSDNVA SYMGQMAMAM GQLGTLEGFI RQADNLRLQT LQQMLRVLTT
301: RQSARALLAI HDYSSRLRAL SSLWLARPRE

Arabidopsis Description

TGA6TGACG motif-binding factor 6 [Source:UniProtKB/TrEMBL;Acc:F4J8P7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.