Factsheet for Zm00001d022542_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003927_P001
Zm00001d004966_P001
Zm00001d008225_P001
Zm00001d010658_P001
Zm00001d011878_P001
Zm00001d012553_P003
Zm00001d016593_P001
Zm00001d022542_P002
Zm00001d023246_P001
Zm00001d028936_P001
Zm00001d039469_P001
Zm00001d042111_P001
Zm00001d043153_P001
Zm00001d052468_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06960.1	Zm00001d039469_P001	AT1G64280.1	10659709
AT5G06960.1	Zm00001d039469_P001	AT1G64280.1	10662863
AT5G06960.1	Zm00001d039469_P001	AT1G64280.1	12383081
AT5G06960.1	Zm00001d039469_P001	AT1G64280.1	15634206
AT5G06960.1	Zm00001d004966_P001	AT2G41370.1	21798944
AT5G06960.1	Zm00001d011878_P001	AT2G41370.1	21798944
AT5G06960.1	Zm00001d023246_P001	AT2G41370.1	21798944
AT5G06960.1	Zm00001d042111_P001	AT2G41370.1	21798944
AT5G06960.1	Zm00001d052468_P002	AT2G41370.1	21798944
AT5G06960.1	Zm00001d003927_P001	AT3G02000.1	19218396
AT5G06960.1	Zm00001d016593_P001	AT3G02000.1	19218396
AT5G06960.1	Zm00001d008225_P001	AT5G06960.1	17098811
AT5G06960.1	Zm00001d010658_P001	AT5G06960.1	17098811
AT5G06960.1	Zm00001d012553_P003	AT5G06960.1	17098811
AT5G06960.1	Zm00001d022542_P002	AT5G06960.1	17098811
AT5G06960.1	Zm00001d028936_P001	AT5G06960.1	17098811
AT5G06960.1	Zm00001d043153_P001	AT5G06960.1	17098811
AT5G06960.1	Zm00001d008225_P001	AT5G06960.1	21798944
AT5G06960.1	Zm00001d010658_P001	AT5G06960.1	21798944
AT5G06960.1	Zm00001d012553_P003	AT5G06960.1	21798944
AT5G06960.1	Zm00001d022542_P002	AT5G06960.1	21798944
AT5G06960.1	Zm00001d028936_P001	AT5G06960.1	21798944
AT5G06960.1	Zm00001d043153_P001	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG36997	Sorghum	nucleus	98.5	98.5
TraesCS2D01G096800.2	Wheat	nucleus	93.99	93.15
Os07t0687700-01	Rice	nucleus	93.39	93.11
TraesCS2B01G113200.2	Wheat	nucleus	93.69	92.86
TraesCS2A01G097500.2	Wheat	nucleus	93.69	92.86
HORVU2Hr1G016580.5	Barley	nucleus	89.19	88.13
Solyc11g064950.1.1	Tomato	nucleus	79.28	81.48
PGSC0003DMT400024428	Potato	nucleus	79.28	81.48
KRH36324	Soybean	nucleus	79.88	80.12
Solyc01g008730.2.1	Tomato	nucleus	75.98	77.37
CDY08443	Canola	nucleus	74.17	74.62
Bra034767.1-P	Field mustard	nucleus	73.87	74.32
AT5G06950.5	Thale cress	nucleus	73.57	74.24
Bra009241.1-P	Field mustard	nucleus	68.77	73.87
Bra001443.1-P	Field mustard	nucleus	72.97	73.41
CDX73830	Canola	nucleus	72.97	73.41
PGSC0003DMT400026710	Potato	mitochondrion	38.74	73.3
CDY00762	Canola	nucleus	72.67	73.11
CDY50562	Canola	nucleus	72.67	72.46
Bra038705.1-P	Field mustard	nucleus	72.67	72.46
CDY52616	Canola	nucleus	72.37	72.37
CDX70053	Canola	nucleus	70.87	72.17
CDX98971	Canola	nucleus	70.87	71.95
AT5G06960.1	Thale cress	nucleus	70.57	71.21
CDY05010	Canola	nucleus	69.37	70.86
CDY14061	Canola	nucleus	69.07	70.55
Bra028713.1-P	Field mustard	nucleus	69.07	70.55
AT3G12250.4	Thale cress	nucleus	73.27	68.73
Zm00001d028936_P001	Maize	nucleus	79.58	67.77
KRH66777	Soybean	nucleus	58.56	67.24
CDY42138	Canola	nucleus	63.66	65.43
PGSC0003DMT400060922	Potato	nucleus	51.05	63.43
Zm00001d008225_P001	Maize	nucleus	78.98	62.62
Solyc10g080780.1.1	Tomato	cytosol	50.15	62.08
Zm00001d010658_P001	Maize	nucleus	62.46	60.29
KRG93068	Soybean	nucleus	79.58	59.68
VIT_08s0007g05170.t01	Wine grape	nucleus	79.28	58.54
VIT_13s0084g00660.t01	Wine grape	nucleus	81.68	58.0
PGSC0003DMT400060926	Potato	nucleus	75.08	57.74
Zm00001d023424_P001	Maize	nucleus	53.15	57.1
KRH20680	Soybean	nucleus	79.28	56.29
Solyc10g080770.1.1	Tomato	nucleus	75.08	55.56
KRG95103	Soybean	nucleus	75.08	54.47
KRH66771	Soybean	nucleus	74.77	54.13
KRH13334	Soybean	nucleus	78.98	52.92
Zm00001d043153_P001	Maize	nucleus	64.26	50.71
Zm00001d012553_P003	Maize	nucleus	69.67	49.36
Zm00001d037316_P008	Maize	cytosol, nucleus, peroxisome, plastid	49.85	48.97
GSMUA_Achr8P21670_001	Banana	nucleus	80.18	45.88
Zm00001d037317_P003	Maize	nucleus	58.56	45.14
Zm00001d016312_P001	Maize	cytosol	12.31	44.09
Zm00001d026398_P006	Maize	nucleus	49.25	39.81
Zm00001d015845_P001	Maize	cytosol	31.83	39.41
Zm00001d052543_P001	Maize	nucleus	56.16	38.48
Zm00001d024160_P003	Maize	nucleus	48.35	37.97
Zm00001d041428_P001	Maize	cytosol	17.72	37.82
Zm00001d005143_P001	Maize	nucleus	46.55	37.71
Zm00001d020938_P002	Maize	nucleus	52.55	36.01
Zm00001d002143_P002	Maize	cytosol	46.25	35.08
Zm00001d006027_P002	Maize	nucleus	51.05	33.8
Zm00001d046751_P001	Maize	nucleus	44.44	32.31
Zm00001d038296_P001	Maize	nucleus	49.25	31.6
Zm00001d012294_P009	Maize	nucleus	51.35	30.81
Zm00001d042777_P006	Maize	nucleus	54.05	27.69
Zm00001d045823_P001	Maize	cytosol	20.42	22.52
Zm00001d015846_P001	Maize	nucleus	12.91	21.29

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100279481	MapMan:15.5.4.1	MapMan:15.5.4.7.1	MapMan:26.8.3.1.2	EMBL:BT061586
UniProt:C0HGY0	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607	GO:GO:0009987	GO:GO:0042742
GO:GO:0043565	GO:GO:0045893	InterPro:IPR004827	InterPro:IPR025422	ProteinID:ONM60972.1	ProteinID:ONM60976.1
ProteinID:ONM60977.1	PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806
PANTHER:PTHR22952	PANTHER:PTHR22952:SF220	SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI00019485C7
EnsemblPlantsGene:Zm00001d022542	EnsemblPlants:Zm00001d022542_P002	EnsemblPlants:Zm00001d022542_T002	InterPro:bZIP	SEG:seg	:

Description

bZIP-transcription factor 54Transcription factor TGA6

Coordinates

chr7:-:179748248..179754088

Molecular Weight (calculated)

37153.3 Da

IEP (calculated)

9.339

GRAVY (calculated)

-0.521

Length

333 amino acids

Sequence
(BLAST)

001: MADASSRTDT SIVLDDNDKN HRMENGSGAV VPSNSSDRSD RSDKPLDQKT MRRLAQNREA ARKSRLRKKA YVQQLESSKL KLAQLEQELQ KARQQGIFIS
101: SSGDQTHAMS GNGALTFDIE YARWLEDQNK QINELRTAVN AHASDSDLRL IVDGIMAHYD EIFKVKGVAA KADVFHILSG MWKTPAERCF LWLGGFRPSE
201: LLKLLANHLE PLTEQQMLGL TNLQQSSQQA EDALSQGMEA LQQSLAETLA GSLGPAGSSG NVANYMGQMA MAMGKLGTLE NFLRQADNLR QQTLHQMQRI
301: LTIRQASRAL LAIHDYFSRL RALSSLWLAR PRE

Best Arabidopsis Sequence Match ( AT5G06950.2 )
(BLAST)

001: MADTSPRTDV STDDDTDHPD LGSEGALVNT AASDSSDRSK GKMDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISGTG
101: DQAHSTGGNG ALAFDAEHSR WLEEKNKQMN ELRSALNAHA GDSELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQLMGINNL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSGNVA SYMGQMAMAM GKLGTLEGFI RQADNLRLQT LQQMIRVLTT
301: RQSARALLAI HDYFSRLRAL SSLWLARPRE

Arabidopsis Description

TGA2BZIP transcription factor TGA2 [Source:UniProtKB/TrEMBL;Acc:B2BDR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.