Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d003927_P001 | |
| Zm00001d016593_P001 | |
| Zm00001d039469_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG38496 | Sorghum | nucleus | 58.25 | 79.42 |
| OQU79985 | Sorghum | golgi, vacuole | 87.03 | 71.51 |
| GSMUA_Achr5P16630_001 | Banana | nucleus | 49.29 | 57.26 |
| VIT_07s0031g01320.t01 | Wine grape | nucleus | 46.23 | 56.16 |
| VIT_18s0001g04470.t01 | Wine grape | nucleus | 44.34 | 51.79 |
| Zm00001d026398_P006 | Maize | nucleus | 49.53 | 50.97 |
| KRH31239 | Soybean | nucleus | 43.63 | 50.82 |
| KRG97639 | Soybean | nucleus | 43.16 | 50.55 |
| AT5G65210.2 | Thale cress | nucleus | 43.87 | 50.54 |
| Zm00001d016312_P001 | Maize | cytosol | 11.08 | 50.54 |
| Bra024366.1-P | Field mustard | nucleus | 43.63 | 50.41 |
| CDY08810 | Canola | nucleus | 43.63 | 50.41 |
| Bra015646.1-P | Field mustard | nucleus | 40.09 | 50.15 |
| Solyc04g072460.2.1 | Tomato | nucleus | 42.45 | 49.86 |
| CDX85782 | Canola | nucleus | 42.45 | 49.72 |
| Bra028604.1-P | Field mustard | nucleus | 42.45 | 49.72 |
| CDY14552 | Canola | nucleus | 42.92 | 49.59 |
| CDY37811 | Canola | nucleus | 43.16 | 49.46 |
| CDY40074 | Canola | nucleus | 42.22 | 49.45 |
| Bra031871.1-P | Field mustard | nucleus | 42.92 | 49.19 |
| CDY33975 | Canola | nucleus | 42.92 | 49.19 |
| AT5G10030.3 | Thale cress | nucleus | 42.22 | 49.18 |
| Solyc12g056860.1.1 | Tomato | nucleus | 40.33 | 49.14 |
| PGSC0003DMT400070884 | Potato | nucleus | 41.51 | 48.75 |
| Zm00001d022542_P002 | Maize | nucleus | 37.97 | 48.35 |
| CDX68037 | Canola | nucleus | 42.22 | 48.25 |
| KRH63045 | Soybean | cytosol | 10.61 | 47.87 |
| PGSC0003DMT400033308 | Potato | nucleus | 39.62 | 47.19 |
| PGSC0003DMT400043651 | Potato | nucleus | 40.09 | 47.09 |
| Os08t0176900-01 | Rice | nucleus | 43.16 | 47.04 |
| AT1G77920.1 | Thale cress | nucleus | 40.8 | 47.01 |
| Bra009063.1-P | Field mustard | nucleus | 40.33 | 46.98 |
| CDX69866 | Canola | nucleus | 40.33 | 46.98 |
| CDY18683 | Canola | cytosol | 40.8 | 46.51 |
| Solyc04g054320.2.1 | Tomato | nucleus | 40.57 | 46.49 |
| KRH59415 | Soybean | nucleus | 40.57 | 46.49 |
| KRH53141 | Soybean | nucleus | 38.92 | 46.48 |
| CDY21625 | Canola | nucleus | 39.86 | 46.43 |
| Zm00001d023424_P001 | Maize | nucleus | 33.73 | 46.13 |
| CDX81273 | Canola | nucleus | 42.22 | 46.02 |
| Zm00001d002143_P002 | Maize | cytosol | 47.17 | 45.56 |
| Bra031364.1-P | Field mustard | nucleus | 40.57 | 45.5 |
| Solyc04g011670.2.1 | Tomato | nucleus | 40.09 | 45.45 |
| KRH43266 | Soybean | nucleus | 40.57 | 45.38 |
| Bra016389.1-P | Field mustard | nucleus | 38.92 | 44.84 |
| AT1G22070.1 | Thale cress | nucleus | 40.57 | 44.79 |
| KRH64780 | Soybean | nucleus | 38.21 | 44.75 |
| CDY41495 | Canola | nucleus | 38.92 | 44.72 |
| CDY38253 | Canola | nucleus | 40.33 | 44.42 |
| CDY38843 | Canola | nucleus | 38.68 | 44.32 |
| KRH16629 | Soybean | nucleus | 38.44 | 44.05 |
| Bra037809.1-P | Field mustard | nucleus | 40.33 | 43.62 |
| KRH18838 | Soybean | nucleus | 37.97 | 43.51 |
| Zm00001d010658_P001 | Maize | nucleus | 34.2 | 42.03 |
| CDY21336 | Canola | nucleus | 41.27 | 41.87 |
| PGSC0003DMT400016235 | Potato | nucleus | 37.97 | 41.07 |
| CDX88399 | Canola | nucleus | 41.51 | 40.93 |
| CDX87494 | Canola | nucleus | 41.98 | 40.09 |
| Zm00001d037316_P008 | Maize | cytosol, nucleus, peroxisome, plastid | 30.66 | 38.35 |
| Zm00001d008225_P001 | Maize | nucleus | 37.5 | 37.86 |
| Zm00001d028936_P001 | Maize | nucleus | 34.91 | 37.85 |
| Zm00001d015845_P001 | Maize | cytosol | 23.35 | 36.8 |
| Zm00001d037317_P003 | Maize | nucleus | 37.03 | 36.34 |
| Bra037374.1-P | Field mustard | nucleus | 26.65 | 35.99 |
| KRG92164 | Soybean | nucleus | 19.58 | 35.32 |
| Zm00001d041428_P001 | Maize | cytosol | 12.5 | 33.97 |
| Zm00001d052543_P001 | Maize | nucleus | 38.92 | 33.95 |
| Zm00001d005143_P001 | Maize | nucleus | 32.31 | 33.33 |
| KRH34622 | Soybean | cytosol | 17.69 | 32.47 |
| Zm00001d043153_P001 | Maize | nucleus | 32.31 | 32.46 |
| Zm00001d046751_P001 | Maize | nucleus | 34.43 | 31.88 |
| Zm00001d020938_P002 | Maize | nucleus | 35.85 | 31.28 |
| Zm00001d012553_P003 | Maize | nucleus | 33.96 | 30.64 |
| Zm00001d006027_P002 | Maize | nucleus | 35.85 | 30.22 |
| Zm00001d038296_P001 | Maize | nucleus | 33.96 | 27.75 |
| CDX79240 | Canola | nucleus | 36.08 | 26.84 |
| Zm00001d012294_P009 | Maize | nucleus | 33.25 | 25.41 |
| Zm00001d042777_P006 | Maize | nucleus | 34.43 | 22.46 |
| Zm00001d015846_P001 | Maize | nucleus | 10.38 | 21.78 |
| Zm00001d045823_P001 | Maize | cytosol | 13.44 | 18.87 |
Protein Annotations
| Gene3D:1.20.5.170 | EntrezGene:100192658 | MapMan:15.5.4.1 | MapMan:15.5.4.7.1 | UniProt:A0A1D6IXU0 | ProteinID:AQK40722.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR004827 | InterPro:IPR025422 | PFAM:PF00170 | PFAM:PF14144 |
| ScanProsite:PS00036 | PFscan:PS50217 | PFscan:PS51806 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF160 | SMART:SM00338 |
| SUPFAM:SSF57959 | InterPro:TGA_domain | UniParc:UPI0004DE9DC2 | EnsemblPlantsGene:Zm00001d024160 | EnsemblPlants:Zm00001d024160_P003 | EnsemblPlants:Zm00001d024160_T003 |
| InterPro:bZIP | SEG:seg | : | : | : | : |
Description
bZIP-transcription factor 107Transcription factor TGA4
Coordinates
chr10:-:51315314..51327171
Molecular Weight (calculated)
46896.2 Da
IEP (calculated)
9.399
GRAVY (calculated)
-0.369
Length
424 amino acids
Sequence
(BLAST)
(BLAST)
001: MELYPGYLQD HFNIHKLSRL QPLPTSGAPA RYVTSGPVGA MGIYERQRHL VPTGVWGEPF RLDADAVAMP LPLAAFPSVT VATPAPLDVV EPEAEEIKLG
101: KRLLQAQQDD VPRMQEAPPS SDSFSHDDDD ARPRDKVQRR LAQNREAARK SRLRKKAYIR NLETSRVKLA QLEQELIMAR RQQHGAYGVG GGVAPPAAPV
201: DPRVAAFELE YAHWVEEQSR QATELRAALQ SHAPDVQLRV LVDAALAHYG ALFQAKARAA RSDAFFVLSG VWRSPAERFF LWIAGFRPSD LLKVLEPQLS
301: PLMDHQASEV RKLQNTARQL EDALSQGMSK LQQTLVDTLM TVDVSPDGAG GGYAGQQMAC AVGKLADLVD FVDKADHLRQ QTLRNMHKIL TPRQAARGLL
401: ALADYGQRLR ALSSLWAARP REPA
101: KRLLQAQQDD VPRMQEAPPS SDSFSHDDDD ARPRDKVQRR LAQNREAARK SRLRKKAYIR NLETSRVKLA QLEQELIMAR RQQHGAYGVG GGVAPPAAPV
201: DPRVAAFELE YAHWVEEQSR QATELRAALQ SHAPDVQLRV LVDAALAHYG ALFQAKARAA RSDAFFVLSG VWRSPAERFF LWIAGFRPSD LLKVLEPQLS
301: PLMDHQASEV RKLQNTARQL EDALSQGMSK LQQTLVDTLM TVDVSPDGAG GGYAGQQMAC AVGKLADLVD FVDKADHLRQ QTLRNMHKIL TPRQAARGLL
401: ALADYGQRLR ALSSLWAARP REPA
001: MMSSSSPTQL ASLRDMGIYE PFQQIVGWGN VFKSDINDHS PNTATSSIIQ VDPRIDDHNN NIKINYDSSH NQIEAEQPSS NDNQDDDGRI HDKMKRRLAQ
101: NREAARKSRL RKKAYVQQLE ESRLKLSQLE QELEKVKQQG HLGPSGSINT GIASFEMEYS HWLQEQSRRV SELRTALQSH ISDIELKMLV ESCLNHYANL
201: FQMKSDAAKA DVFYLISGMW RTSTERFFQW IGGFRPSELL NVVMPYLQPL TDQQILEVRN LQQSSQQAED ALSQGIDKLQ QSLAESIVID AVIESTHYPT
301: HMAAAIENLQ ALEGFVNQAD HLRQQTLQQM AKILTTRQSA RGLLALGEYL HRLRALSSLW AARPQEPT
101: NREAARKSRL RKKAYVQQLE ESRLKLSQLE QELEKVKQQG HLGPSGSINT GIASFEMEYS HWLQEQSRRV SELRTALQSH ISDIELKMLV ESCLNHYANL
201: FQMKSDAAKA DVFYLISGMW RTSTERFFQW IGGFRPSELL NVVMPYLQPL TDQQILEVRN LQQSSQQAED ALSQGIDKLQ QSLAESIVID AVIESTHYPT
301: HMAAAIENLQ ALEGFVNQAD HLRQQTLQQM AKILTTRQSA RGLLALGEYL HRLRALSSLW AARPQEPT
Arabidopsis Description
TGA7Transcription factor TGA7 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZE2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.