Factsheet for Bra009063.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69866	Canola	nucleus	100.0	100.0
CDY21625	Canola	nucleus	96.7	96.7
Bra028604.1-P	Field mustard	nucleus	90.93	91.44
AT5G10030.3	Thale cress	nucleus	90.11	90.11
Bra024366.1-P	Field mustard	nucleus	81.59	80.93
Bra031871.1-P	Field mustard	nucleus	81.32	80.0
VIT_07s0031g01320.t01	Wine grape	nucleus	67.31	70.2
Bra037809.1-P	Field mustard	nucleus	75.55	70.15
KRG97639	Soybean	nucleus	66.76	67.13
KRH31239	Soybean	nucleus	65.93	65.93
GSMUA_Achr5P16630_001	Banana	nucleus	61.54	61.37
KRH59415	Soybean	nucleus	62.09	61.08
KRH43266	Soybean	nucleus	62.36	59.89
GSMUA_AchrUn_...	Banana	nucleus	57.69	59.32
Zm00001d016312_P001	Maize	cytosol	15.11	59.14
Solyc04g011670.2.1	Tomato	nucleus	60.44	58.82
PGSC0003DMT400033308	Potato	nucleus	56.87	58.15
Solyc04g054320.2.1	Tomato	nucleus	59.07	58.11
GSMUA_Achr10P...	Banana	nucleus	53.85	55.84
Bra015646.1-P	Field mustard	nucleus	51.92	55.75
Bra009241.1-P	Field mustard	nucleus	45.05	52.9
PGSC0003DMT400016235	Potato	nucleus	56.87	52.81
Bra031364.1-P	Field mustard	nucleus	54.67	52.65
Bra034767.1-P	Field mustard	nucleus	47.53	52.27
Bra016389.1-P	Field mustard	nucleus	52.47	51.9
Bra038705.1-P	Field mustard	nucleus	46.98	51.2
Bra028713.1-P	Field mustard	nucleus	45.33	50.61
Bra001443.1-P	Field mustard	nucleus	45.6	50.15
Os04t0637000-01	Rice	nucleus	54.4	49.87
Bra037374.1-P	Field mustard	nucleus	41.48	48.09
KXG27222	Sorghum	nucleus	52.75	47.06
Zm00001d026398_P006	Maize	nucleus	52.2	46.12
KRG92164	Soybean	nucleus	29.4	45.53
TraesCS2A01G526300.1	Wheat	nucleus	50.27	43.68
TraesCS2D01G529000.1	Wheat	nucleus	50.55	43.29
KRH34622	Soybean	cytosol	27.47	43.29
TraesCS2B01G556600.1	Wheat	nucleus	51.65	43.22
KXG38496	Sorghum	nucleus	36.81	43.09
Os08t0176900-01	Rice	nucleus	43.13	40.36
Zm00001d024160_P003	Maize	nucleus	46.98	40.33
Zm00001d002143_P002	Maize	cytosol	48.63	40.32
Zm00001d041428_P001	Maize	cytosol	17.03	39.74
Bra009233.1-P	Field mustard	cytosol	28.85	37.5
Bra004329.1-P	Field mustard	nucleus	44.78	36.96
Bra031622.1-P	Field mustard	nucleus	40.38	34.35
OQU79985	Sorghum	golgi, vacuole	48.63	34.3
Bra018634.1-P	Field mustard	nucleus	40.66	31.16
Bra005914.1-P	Field mustard	nucleus	34.89	29.26
HORVU2Hr1G116090.2	Barley	cytosol	33.79	29.08

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	ProteinID:AAZ67587	ProteinID:AAZ67587.1	EMBL:AC155344
EnsemblPlantsGene:Bra009063	EnsemblPlants:Bra009063.1	EnsemblPlants:Bra009063.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827
InterPro:IPR025422	PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806
PANTHER:PTHR22952	PANTHER:PTHR22952:SF180	UniProt:Q4ABR5	SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain
UniParc:UPI000058C631	InterPro:bZIP	:	:	:	:

Description

AT5G10030 (E=1e-187) TGA4, OBF4 | TGA4 (TGACG MOTIF-BINDING FACTOR 4); DNA binding / calmodulin binding / transcription factor

Coordinates

chrA10:+:15092822..15094462

Molecular Weight (calculated)

41819.7 Da

IEP (calculated)

7.120

GRAVY (calculated)

-0.569

Length

364 amino acids

Sequence
(BLAST)

001: MNTTTSTHFV PPTRFEIYDP LNQIGTMWEE SFKNNGGGFY TPNSIIIPTN QKPYSLSEDG TEGTPHKFDQ EASTSRHPDK TQRRLAQNRE AAKKSRLRKK
101: AYVQQLETSR LKLIHLEQEL DRARQQGFYA SNRVDTNALS FSDNMCSGIV AFEMEYGHWV EEQNRQISEL RTVLNGQVSD IELRLLVDNA MKHYFQLFRM
201: KSAAAKLDVF YIMSGMWKTS AERFFLWIGG FRPSELLKVL LPHFDPMMDQ QVLDVCNLRQ SCQQAEDAVS QGMEKLQHTL AESVAAGELG EGSYVPQITS
301: AMERLEALVS FVNQADHLRH ETLQQMHRIL TTRQAARGLL ALGEYFQRLR ALSSSWETRQ REPT

Best Arabidopsis Sequence Match ( AT5G10030.2 )
(BLAST)

001: MNTTSTHFVP PRRFEVYEPL NQIGMWEESF KNNGDMYTPG SIIIPTNEKP DSLSEDTSHG TEGTPHKFDQ EASTSRHPDK IQRRLAQNRE AARKSRLRKK
101: AYVQQLETSR LKLIHLEQEL DRARQQGFYV GNGVDTNALS FSDNMSSGIV AFEMEYGHWV EEQNRQICEL RTVLHGQVSD IELRSLVENA MKHYFQLFRM
201: KSAAAKIDVF YVMSGMWKTS AERFFLWIGG FRPSELLKVL LPHFDPLTDQ QLLDVCNLRQ SCQQAEDALS QGMEKLQHTL AESVAAGKLG EGSYIPQMTC
301: AMERLEALVS FVNQADHLRH ETLQQMHRIL TTRQAARGLL ALGEYFQRLR ALSSSWAARQ REPT

Arabidopsis Description

TGA4At5g10030 [Source:UniProtKB/TrEMBL;Acc:Q24JJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.