Factsheet for Bra031871.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37811	Canola	nucleus	99.73	99.73
CDY33975	Canola	nucleus	98.92	98.92
Bra024366.1-P	Field mustard	nucleus	92.43	93.19
AT5G65210.2	Thale cress	nucleus	90.27	90.76
Bra028604.1-P	Field mustard	nucleus	81.35	83.15
Bra037809.1-P	Field mustard	nucleus	87.57	82.65
Bra009063.1-P	Field mustard	nucleus	80.0	81.32
VIT_07s0031g01320.t01	Wine grape	nucleus	69.19	73.35
KRG97639	Soybean	nucleus	65.95	67.4
KRH31239	Soybean	nucleus	65.41	66.48
KRH43266	Soybean	nucleus	62.97	61.48
GSMUA_Achr5P16630_001	Banana	nucleus	60.54	61.37
KRH59415	Soybean	nucleus	60.81	60.81
Solyc04g011670.2.1	Tomato	nucleus	61.08	60.43
Zm00001d016312_P001	Maize	cytosol	15.14	60.22
PGSC0003DMT400033308	Potato	nucleus	57.3	59.55
Solyc04g054320.2.1	Tomato	nucleus	59.46	59.46
GSMUA_AchrUn_...	Banana	nucleus	56.76	59.32
Bra015646.1-P	Field mustard	nucleus	53.78	58.7
GSMUA_Achr10P...	Banana	nucleus	53.78	56.7
Bra031364.1-P	Field mustard	nucleus	57.57	56.35
Bra016389.1-P	Field mustard	nucleus	55.95	56.25
Bra037374.1-P	Field mustard	nucleus	46.22	54.46
PGSC0003DMT400016235	Potato	nucleus	56.76	53.57
Bra009241.1-P	Field mustard	nucleus	43.78	52.26
Bra028713.1-P	Field mustard	nucleus	44.86	50.92
Bra001443.1-P	Field mustard	nucleus	45.14	50.45
Bra034767.1-P	Field mustard	nucleus	45.14	50.45
Bra038705.1-P	Field mustard	nucleus	45.14	50.0
Os04t0637000-01	Rice	nucleus	52.7	49.12
KXG27222	Sorghum	nucleus	51.62	46.81
KXG38496	Sorghum	nucleus	38.65	45.98
Zm00001d026398_P006	Maize	nucleus	51.08	45.87
TraesCS2A01G526300.1	Wheat	nucleus	50.27	44.39
TraesCS2B01G556600.1	Wheat	nucleus	52.16	44.37
TraesCS2D01G529000.1	Wheat	nucleus	50.81	44.24
KRG92164	Soybean	nucleus	27.57	43.4
Zm00001d024160_P003	Maize	nucleus	49.19	42.92
KRH34622	Soybean	cytosol	26.49	42.42
Os08t0176900-01	Rice	nucleus	43.24	41.13
Zm00001d041428_P001	Maize	cytosol	17.03	40.38
Zm00001d002143_P002	Maize	cytosol	47.3	39.86
Bra009233.1-P	Field mustard	cytosol	28.11	37.14
Bra004329.1-P	Field mustard	nucleus	43.24	36.28
OQU79985	Sorghum	golgi, vacuole	50.27	36.05
Bra031622.1-P	Field mustard	nucleus	41.35	35.75
Bra018634.1-P	Field mustard	nucleus	41.89	32.63
Bra005914.1-P	Field mustard	nucleus	35.14	29.95
HORVU2Hr1G116090.2	Barley	cytosol	34.05	29.79

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	EnsemblPlantsGene:Bra031871	EnsemblPlants:Bra031871.1	EnsemblPlants:Bra031871.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827	InterPro:IPR025422	UniProt:M4ESU1	PFAM:PF00170
PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF266
SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI0002546903	InterPro:bZIP	:

Description

AT5G65210 (E=2e-195) TGA1 | TGA1; DNA binding / calmodulin binding / transcription factor

Coordinates

chrA02:+:27373744..27375536

Molecular Weight (calculated)

42233.4 Da

IEP (calculated)

8.351

GRAVY (calculated)

-0.535

Length

370 amino acids

Sequence
(BLAST)

001: MNSTSTHFVP PRRVGIYEPL HQFGMWGETF KHNIGNGGDM NTPSHIIIPN NQKLDNNNLS EDTSQGTGGT PHMFDQEAST SKHPDKIQRR LAQNREAARK
101: SRLRKKAYVQ QLETSRLKLI HLEQELDRAR QQGFYVGNGI DTNSLSFSEP MNPGIAAFEM EYGHWIQEQN KQICELRTVL QGQVSDVELR LLVENGMKHY
201: FDLFRMKSAA AKADVFFVMS GMWRTSAERF FLWIGGFRPS DLLKVLLPHF DVMTDQQILD VCNLRQSCQQ AEDALSQGME KLQHTLADCV AGGRLGEGSY
301: IPQVNSAMER LEALVSFVNQ ADHLRHETLQ QMRRILTTRQ AARGLLALGE YFQRLRALSS SWATRHRELT

Best Arabidopsis Sequence Match ( AT5G65210.5 )
(BLAST)

001: MNSTSTHFVP PRRVGIYEPV HQFGMWGESF KSNISNGTMN TPNHIIIPNN QKLDNNVSED TSHGTAGTPH MFDQEASTSR HPDKIQRRLA QNREAARKSR
101: LRKKAYVQQL ETSRLKLIQL EQELDRARQQ GFYVGNGIDT NSLGFSETMN PGIAAFEMEY GHWVEEQNRQ ICELRTVLHG HINDIELRSL VENAMKHYFE
201: LFRMKSSAAK ADVFFVMSGM WRTSAERFFL WIGGFRPSDL LKVLLPHFDV LTDQQLLDVC NLKQSCQQAE DALTQGMEKL QHTLADCVAA GQLGEGSYIP
301: QVNSAMDRLE ALVSFVNQAD HLRHETLQQM YRILTTRQAA RGLLALGEYF QRLRALSSSW ATRHREPT

Arabidopsis Description

TGA1Transcription factor TGA1 [Source:UniProtKB/Swiss-Prot;Acc:Q39237]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.