Factsheet for Bra028604.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85782	Canola	nucleus	100.0	100.0
CDY40074	Canola	nucleus	98.62	98.62
AT5G10030.3	Thale cress	nucleus	91.44	90.93
Bra009063.1-P	Field mustard	nucleus	91.44	90.93
Bra024366.1-P	Field mustard	nucleus	83.15	82.02
Bra031871.1-P	Field mustard	nucleus	83.15	81.35
VIT_07s0031g01320.t01	Wine grape	nucleus	70.72	73.35
Bra037809.1-P	Field mustard	nucleus	77.62	71.68
KRG97639	Soybean	nucleus	69.06	69.06
KRH31239	Soybean	nucleus	68.23	67.86
GSMUA_Achr5P16630_001	Banana	nucleus	63.26	62.74
KRH59415	Soybean	nucleus	64.09	62.7
KRH43266	Soybean	nucleus	64.92	62.01
Solyc04g011670.2.1	Tomato	nucleus	62.71	60.7
GSMUA_AchrUn_...	Banana	nucleus	58.56	59.89
PGSC0003DMT400033308	Potato	nucleus	57.18	58.15
Solyc04g054320.2.1	Tomato	nucleus	59.39	58.11
Zm00001d016312_P001	Maize	cytosol	14.92	58.06
GSMUA_Achr10P...	Banana	nucleus	55.52	57.27
Bra015646.1-P	Field mustard	nucleus	53.59	57.23
PGSC0003DMT400016235	Potato	nucleus	59.12	54.59
Bra031364.1-P	Field mustard	nucleus	56.91	54.5
Bra016389.1-P	Field mustard	nucleus	55.25	54.35
Bra009241.1-P	Field mustard	nucleus	44.75	52.26
Bra034767.1-P	Field mustard	nucleus	46.96	51.36
Bra038705.1-P	Field mustard	nucleus	46.96	50.9
Bra028713.1-P	Field mustard	nucleus	45.58	50.61
Bra037374.1-P	Field mustard	nucleus	43.65	50.32
Os04t0637000-01	Rice	nucleus	54.97	50.13
Bra001443.1-P	Field mustard	nucleus	45.58	49.85
KXG27222	Sorghum	nucleus	53.04	47.06
Zm00001d026398_P006	Maize	nucleus	52.21	45.87
KXG38496	Sorghum	nucleus	38.67	45.02
TraesCS2A01G526300.1	Wheat	nucleus	51.38	44.39
KRG92164	Soybean	nucleus	28.73	44.26
TraesCS2D01G529000.1	Wheat	nucleus	51.66	44.0
TraesCS2B01G556600.1	Wheat	nucleus	52.76	43.91
Zm00001d024160_P003	Maize	nucleus	49.72	42.45
KRH34622	Soybean	cytosol	27.07	42.42
Zm00001d002143_P002	Maize	cytosol	48.9	40.32
Os08t0176900-01	Rice	nucleus	42.54	39.59
Bra009233.1-P	Field mustard	cytosol	29.83	38.57
Zm00001d041428_P001	Maize	cytosol	16.57	38.46
Bra004329.1-P	Field mustard	nucleus	46.13	37.87
Bra031622.1-P	Field mustard	nucleus	42.54	35.98
OQU79985	Sorghum	golgi, vacuole	50.55	35.47
Bra018634.1-P	Field mustard	nucleus	42.54	32.42
Bra005914.1-P	Field mustard	nucleus	36.19	30.18
HORVU2Hr1G116090.2	Barley	cytosol	33.43	28.61

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	EnsemblPlantsGene:Bra028604	EnsemblPlants:Bra028604.1	EnsemblPlants:Bra028604.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827	InterPro:IPR025422	UniProt:M4EII9	PFAM:PF00170
PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF266
SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI000058C618	InterPro:bZIP	:

Description

AT5G10030 (E=5e-190) TGA4, OBF4 | TGA4 (TGACG MOTIF-BINDING FACTOR 4); DNA binding / calmodulin binding / transcription factor

Coordinates

chrA02:+:1266269..1268131

Molecular Weight (calculated)

41617.5 Da

IEP (calculated)

7.758

GRAVY (calculated)

-0.538

Length

362 amino acids

Sequence
(BLAST)

001: MNTTSTHFVP PRRFEIYETT LNQVSMWEES FKNNGGIFTP NSIIIPTDAK LDSLSEDTSH GTPHKFDQEA STSRHPDKTQ RRLAQNREAA RKSRLRKKAY
101: VQQLETSRLK LIHLEQELDR ARQQGFYEGN RVDTNALGFS DKMSSGIVAF EMEYGHWVEE QNRQISELRT VLQGQVSDVE LRLLVDNAMK HYFQLFRMKS
201: AAAKIDVFYI MSGMWKTSAE RFFMWIGGFR PSELLKVLLP HFDPLMDQQV LDVCNLRQSC QQAEDAVSQG MEKLQHTLAD SVAAGNLGEG SYIPQITCAM
301: ERLEALVSFV NQADHLRHET LQQMHRILTT RQAARGLLAL GEYFQRLRAL SSSWATRQRE PT

Best Arabidopsis Sequence Match ( AT5G10030.2 )
(BLAST)

001: MNTTSTHFVP PRRFEVYEPL NQIGMWEESF KNNGDMYTPG SIIIPTNEKP DSLSEDTSHG TEGTPHKFDQ EASTSRHPDK IQRRLAQNRE AARKSRLRKK
101: AYVQQLETSR LKLIHLEQEL DRARQQGFYV GNGVDTNALS FSDNMSSGIV AFEMEYGHWV EEQNRQICEL RTVLHGQVSD IELRSLVENA MKHYFQLFRM
201: KSAAAKIDVF YVMSGMWKTS AERFFLWIGG FRPSELLKVL LPHFDPLTDQ QLLDVCNLRQ SCQQAEDALS QGMEKLQHTL AESVAAGKLG EGSYIPQMTC
301: AMERLEALVS FVNQADHLRH ETLQQMHRIL TTRQAARGLL ALGEYFQRLR ALSSSWAARQ REPT

Arabidopsis Description

TGA4At5g10030 [Source:UniProtKB/TrEMBL;Acc:Q24JJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.