Factsheet for Bra037374.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX81273	Canola	nucleus	59.24	47.81
Bra037809.1-P	Field mustard	nucleus	59.55	47.7
Bra031871.1-P	Field mustard	nucleus	54.46	46.22
Bra024366.1-P	Field mustard	nucleus	53.5	45.78
AT5G65210.2	Thale cress	nucleus	53.18	45.38
Bra028604.1-P	Field mustard	nucleus	50.32	43.65
Bra009063.1-P	Field mustard	nucleus	48.09	41.48
KRG97639	Soybean	nucleus	47.45	41.16
VIT_07s0031g01320.t01	Wine grape	nucleus	45.22	40.69
KRH31239	Soybean	nucleus	47.13	40.66
Zm00001d016312_P001	Maize	cytosol	11.78	39.78
GSMUA_Achr5P16630_001	Banana	nucleus	43.31	37.26
Bra015646.1-P	Field mustard	nucleus	39.49	36.58
KRH59415	Soybean	nucleus	42.99	36.49
Bra016389.1-P	Field mustard	nucleus	42.68	36.41
KRH43266	Soybean	nucleus	43.31	35.88
GSMUA_AchrUn_...	Banana	nucleus	40.45	35.88
Bra031364.1-P	Field mustard	nucleus	42.68	35.45
GSMUA_Achr10P...	Banana	nucleus	39.49	35.33
Solyc04g054320.2.1	Tomato	nucleus	40.76	34.59
Bra009241.1-P	Field mustard	nucleus	33.76	34.19
Solyc04g011670.2.1	Tomato	nucleus	40.45	33.96
Bra001443.1-P	Field mustard	nucleus	35.67	33.84
KXG38496	Sorghum	nucleus	33.44	33.76
PGSC0003DMT400033308	Potato	nucleus	38.22	33.71
Bra038705.1-P	Field mustard	nucleus	35.03	32.93
Bra034767.1-P	Field mustard	nucleus	34.39	32.63
Bra028713.1-P	Field mustard	nucleus	33.44	32.21
Os04t0637000-01	Rice	nucleus	38.22	30.23
KXG27222	Sorghum	nucleus	37.9	29.17
PGSC0003DMT400016235	Potato	nucleus	35.99	28.83
Os08t0176900-01	Rice	nucleus	34.39	27.76
TraesCS2A01G526300.1	Wheat	nucleus	35.99	26.97
Zm00001d041428_P001	Maize	cytosol	13.38	26.92
Zm00001d026398_P006	Maize	nucleus	35.03	26.7
TraesCS2B01G556600.1	Wheat	nucleus	36.94	26.67
Zm00001d024160_P003	Maize	nucleus	35.99	26.65
TraesCS2D01G529000.1	Wheat	nucleus	35.99	26.59
KRG92164	Soybean	nucleus	19.11	25.53
Bra004329.1-P	Field mustard	nucleus	35.67	25.4
Bra031622.1-P	Field mustard	nucleus	34.08	25.0
Zm00001d002143_P002	Maize	cytosol	34.39	24.6
KRH34622	Soybean	cytosol	17.2	23.38
Bra018634.1-P	Field mustard	nucleus	33.76	22.32
OQU79985	Sorghum	golgi, vacuole	36.31	22.09
Bra009233.1-P	Field mustard	cytosol	19.43	21.79
Bra005914.1-P	Field mustard	nucleus	27.07	19.59
HORVU2Hr1G116090.2	Barley	cytosol	17.52	13.0

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EnsemblPlantsGene:Bra037374	EnsemblPlants:Bra037374.1	EnsemblPlants:Bra037374.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR004827	InterPro:IPR025422	UniProt:M4F8G2	PFAM:PF00170	PFAM:PF14144
ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF266	SMART:SM00338
SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI0002541A39	InterPro:bZIP	SEG:seg	:

Description

AT5G65210 (E=9e-041) TGA1 | TGA1; DNA binding / calmodulin binding / transcription factor

Coordinates

chrA09:-:823801..825238

Molecular Weight (calculated)

36486.8 Da

IEP (calculated)

8.568

GRAVY (calculated)

-0.420

Length

314 amino acids

Sequence
(BLAST)

001: MNSTSTHFVP PRRVNIYEPL HQFGMWGETF KSNIGNGNIN TSEDTSHGTP LIFDQETSTS RHPDKIKRRL AQNREAAKKS RLRKKAYVQQ LETSRLKLIQ
101: LEQELDRARQ QGFYVGNGID TSTTTSLGFS ENMNPGLYQE QGSILDKNQN LNVKIKTGFA AFEMEYGQWI EEQNKQICEL RTVLQGHVGD VELRLLVAIA
201: MKHYFDLFRM KSAAAKEDVF FVMSGMWRTS ADRFRFRKPP WNFNTPLCSL WCLCKLWSMV MDKLRCRLQD IIVGVDSASI IFQSEEWWCS MENYLLSLLV
301: FRDLLLLNTY STDF

Best Arabidopsis Sequence Match ( AT5G65210.1 )
(BLAST)

001: MNSTSTHFVP PRRVGIYEPV HQFGMWGESF KSNISNGTMN TPNHIIIPNN QKLDNNVSED TSHGTAGTPH MFDQEASTSR HPDKIQRRLA QNREAARKSR
101: LRKKAYVQQL ETSRLKLIQL EQELDRARQQ GFYVGNGIDT NSLGFSETMN PGIAAFEMEY GHWVEEQNRQ ICELRTVLHG HINDIELRSL VENAMKHYFE
201: LFRMKSSAAK ADVFFVMSGM WRTSAERFFL WIGGFRPSDL LKVLLPHFDV LTDQQLLDVC NLKQSCQQAE DALTQGMEKL QHTLADCVAA GQLGEGSYIP
301: QVNSAMDRLE ALVSFVNQAD HLRHETLQQM YRILTTRQAA RGLLALGEYF QRLRALSSSW ATRHREPT

Arabidopsis Description

TGA1Transcription factor TGA1 [Source:UniProtKB/Swiss-Prot;Acc:Q39237]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.