Factsheet for Bra024366.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08810	Canola	nucleus	100.0	100.0
CDY14552	Canola	nucleus	97.55	97.55
Bra031871.1-P	Field mustard	nucleus	93.19	92.43
AT5G65210.2	Thale cress	nucleus	92.64	92.39
Bra028604.1-P	Field mustard	nucleus	82.02	83.15
Bra037809.1-P	Field mustard	nucleus	88.01	82.4
Bra009063.1-P	Field mustard	nucleus	80.93	81.59
VIT_07s0031g01320.t01	Wine grape	nucleus	70.57	74.21
KRG97639	Soybean	nucleus	67.3	68.23
KRH31239	Soybean	nucleus	66.76	67.31
GSMUA_Achr5P16630_001	Banana	nucleus	63.22	63.56
Solyc04g011670.2.1	Tomato	nucleus	62.94	61.76
KRH59415	Soybean	nucleus	62.13	61.62
KRH43266	Soybean	nucleus	63.49	61.48
GSMUA_AchrUn_...	Banana	nucleus	58.86	61.02
PGSC0003DMT400033308	Potato	nucleus	58.58	60.39
Solyc04g054320.2.1	Tomato	nucleus	60.76	60.27
Bra015646.1-P	Field mustard	nucleus	55.31	59.88
GSMUA_Achr10P...	Banana	nucleus	55.59	58.12
Bra031364.1-P	Field mustard	nucleus	59.4	57.67
Bra016389.1-P	Field mustard	nucleus	57.22	57.07
Zm00001d016312_P001	Maize	cytosol	14.44	56.99
PGSC0003DMT400016235	Potato	nucleus	58.58	54.85
Bra037374.1-P	Field mustard	nucleus	45.78	53.5
Bra009241.1-P	Field mustard	nucleus	44.69	52.9
Bra028713.1-P	Field mustard	nucleus	46.87	52.76
Bra034767.1-P	Field mustard	nucleus	47.14	52.27
Bra038705.1-P	Field mustard	nucleus	46.59	51.2
Bra001443.1-P	Field mustard	nucleus	45.78	50.76
Os04t0637000-01	Rice	nucleus	53.13	49.12
KXG27222	Sorghum	nucleus	52.59	47.3
KXG38496	Sorghum	nucleus	39.78	46.95
Zm00001d026398_P006	Maize	nucleus	52.04	46.36
TraesCS2A01G526300.1	Wheat	nucleus	51.5	45.11
TraesCS2B01G556600.1	Wheat	nucleus	53.41	45.06
TraesCS2D01G529000.1	Wheat	nucleus	52.04	44.94
KRG92164	Soybean	nucleus	28.34	44.26
Zm00001d024160_P003	Maize	nucleus	50.41	43.63
KRH34622	Soybean	cytosol	27.25	43.29
Os08t0176900-01	Rice	nucleus	42.78	40.36
Zm00001d002143_P002	Maize	cytosol	48.23	40.32
Zm00001d041428_P001	Maize	cytosol	16.62	39.1
Bra009233.1-P	Field mustard	cytosol	28.61	37.5
Bra004329.1-P	Field mustard	nucleus	44.96	37.41
OQU79985	Sorghum	golgi, vacuole	51.77	36.82
Bra031622.1-P	Field mustard	nucleus	42.78	36.68
Bra018634.1-P	Field mustard	nucleus	43.05	33.26
Bra005914.1-P	Field mustard	nucleus	36.24	30.65
HORVU2Hr1G116090.2	Barley	cytosol	34.33	29.79

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	ProteinID:ACU32463	ProteinID:ACU32463.1	EnsemblPlantsGene:Bra024366
EnsemblPlants:Bra024366.1	EnsemblPlants:Bra024366.1-P	ncoils:Coil	UniProt:E6Y8B7	EMBL:FJ532057	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR004827	InterPro:IPR025422	PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217
PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF266	SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain
UniParc:UPI0001F3467C	InterPro:bZIP	:	:	:	:

Description

AT5G65210 (E=2e-198) TGA1 | TGA1; DNA binding / calmodulin binding / transcription factor

Coordinates

chrA06:+:15252652..15254516

Molecular Weight (calculated)

41953.9 Da

IEP (calculated)

7.777

GRAVY (calculated)

-0.545

Length

367 amino acids

Sequence
(BLAST)

001: MNSTSTHFVP PSRVGIYEPL HQFGMWGEPF KNNIGNGGSM NTPSHIIIPN NQKLDNNNLS EDTSHGTPHM FDQEASTSRH PDKIQRRLAQ NREAARKSRL
101: RKKAYVQQLE TSRLKLIQLE QELDRARQQG FYVGNGIDTS SLGFSETMNP GIAAFEMEYG HWIEEQNRQI CELRTVLHGH VTDVELRSLV ENTMKHYFEL
201: FRMKSAAAKA DVFFVMSGMW RTSAERFFLW IGGFRPSDLL KVLLPHFDVM TDQQVLDVCN LRQSCQQAED ALSQGMEKLQ HTLAECVARG GLGEGNYIPQ
301: VNSAMERLEA LVSFVNQADH LRHETLQQMH RILTTRQAAR GLLALGEYFQ RLRALSSSWA TRHREPT

Best Arabidopsis Sequence Match ( AT5G65210.5 )
(BLAST)

001: MNSTSTHFVP PRRVGIYEPV HQFGMWGESF KSNISNGTMN TPNHIIIPNN QKLDNNVSED TSHGTAGTPH MFDQEASTSR HPDKIQRRLA QNREAARKSR
101: LRKKAYVQQL ETSRLKLIQL EQELDRARQQ GFYVGNGIDT NSLGFSETMN PGIAAFEMEY GHWVEEQNRQ ICELRTVLHG HINDIELRSL VENAMKHYFE
201: LFRMKSSAAK ADVFFVMSGM WRTSAERFFL WIGGFRPSDL LKVLLPHFDV LTDQQLLDVC NLKQSCQQAE DALTQGMEKL QHTLADCVAA GQLGEGSYIP
301: QVNSAMDRLE ALVSFVNQAD HLRHETLQQM YRILTTRQAA RGLLALGEYF QRLRALSSSW ATRHREPT

Arabidopsis Description

TGA1Transcription factor TGA1 [Source:UniProtKB/Swiss-Prot;Acc:Q39237]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.