CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024366.1-P	Field mustard	nucleus	100.0	100.0
CDY14552	Canola	nucleus	97.55	97.55
CDY33975	Canola	nucleus	94.28	93.51
CDY37811	Canola	nucleus	93.46	92.7
AT5G65210.2	Thale cress	nucleus	92.64	92.39
CDY18683	Canola	cytosol	89.92	88.71
CDX81273	Canola	nucleus	91.83	86.63
CDX85782	Canola	nucleus	82.02	83.15
CDY40074	Canola	nucleus	81.2	82.32
CDX69866	Canola	nucleus	80.93	81.59
CDY21625	Canola	nucleus	78.75	79.4
VIT_07s0031g01320.t01	Wine grape	nucleus	70.57	74.21
KRG97639	Soybean	nucleus	67.3	68.23
KRH31239	Soybean	nucleus	66.76	67.31
GSMUA_Achr5P16630_001	Banana	nucleus	63.22	63.56
Solyc04g011670.2.1	Tomato	nucleus	62.94	61.76
KRH59415	Soybean	nucleus	62.13	61.62
KRH43266	Soybean	nucleus	63.49	61.48
GSMUA_AchrUn_...	Banana	nucleus	58.86	61.02
PGSC0003DMT400033308	Potato	nucleus	58.58	60.39
Solyc04g054320.2.1	Tomato	nucleus	60.76	60.27
GSMUA_Achr10P...	Banana	nucleus	55.59	58.12
CDY38843	Canola	nucleus	57.49	57.03
Zm00001d016312_P001	Maize	cytosol	14.44	56.99
CDY41495	Canola	nucleus	57.22	56.91
CDY38253	Canola	nucleus	58.86	56.1
CDX68037	Canola	nucleus	56.13	55.53
PGSC0003DMT400016235	Potato	nucleus	58.58	54.85
CDY05010	Canola	nucleus	46.87	52.76
CDY14061	Canola	nucleus	46.87	52.76
CDY08443	Canola	nucleus	47.14	52.27
CDY21336	Canola	nucleus	59.13	51.91
CDY50562	Canola	nucleus	46.59	51.2
CDX98971	Canola	nucleus	45.5	50.91
CDX70053	Canola	nucleus	45.23	50.76
CDX73830	Canola	nucleus	45.78	50.76
CDY52616	Canola	nucleus	46.05	50.75
CDY00762	Canola	nucleus	45.5	50.45
CDX88399	Canola	nucleus	57.77	49.3
Os04t0637000-01	Rice	nucleus	53.13	49.12
CDX87494	Canola	nucleus	58.58	48.42
KXG27222	Sorghum	nucleus	52.59	47.3
KXG38496	Sorghum	nucleus	39.78	46.95
Zm00001d026398_P006	Maize	nucleus	52.04	46.36
CDY42138	Canola	nucleus	40.05	45.37
TraesCS2A01G526300.1	Wheat	nucleus	51.5	45.11
TraesCS2B01G556600.1	Wheat	nucleus	53.41	45.06
TraesCS2D01G529000.1	Wheat	nucleus	52.04	44.94
KRG92164	Soybean	nucleus	28.34	44.26
Zm00001d024160_P003	Maize	nucleus	50.41	43.63
KRH34622	Soybean	cytosol	27.25	43.29
CDY70396	Canola	mitochondrion	24.25	42.58
CDY71150	Canola	nucleus, plastid	22.89	42.42
Os08t0176900-01	Rice	nucleus	42.78	40.36
Zm00001d002143_P002	Maize	cytosol	48.23	40.32
Zm00001d041428_P001	Maize	cytosol	16.62	39.1
CDX95999	Canola	nucleus	44.96	37.33
CDY38608	Canola	nucleus	44.69	37.1
OQU79985	Sorghum	golgi, vacuole	51.77	36.82
CDY22689	Canola	nucleus	42.23	36.22
CDY70714	Canola	nucleus	32.97	34.38
CDX95068	Canola	nucleus	43.32	33.26
CDX70061	Canola	nucleus	40.87	33.26
CDX93571	Canola	nucleus	43.05	33.05
CDX98963	Canola	nucleus	40.6	33.04
CDY06309	Canola	nucleus	43.32	32.85
CDY70235	Canola	nucleus	32.43	32.69
CDX79240	Canola	nucleus	50.14	32.28
HORVU2Hr1G116090.2	Barley	cytosol	34.33	29.79
CDY00417	Canola	mitochondrion	18.53	29.31

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	GO:A0A078F2R7	UniProt:A0A078F2R7	EnsemblPlants:CDY08810
ProteinID:CDY08810	ProteinID:CDY08810.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00000768001	InterPro:IPR004827
InterPro:IPR025422	PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806
PANTHER:PTHR22952	PANTHER:PTHR22952:SF266	SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI0001F3467C
InterPro:bZIP	:	:	:	:	:

Description

BnaA06g24140DBnaA06g24140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F2R7]

Coordinates

chrLK031989:-:614667..618046

Molecular Weight (calculated)

41953.9 Da

IEP (calculated)

7.777

GRAVY (calculated)

-0.545

Length

367 amino acids

Sequence
(BLAST)

001: MNSTSTHFVP PSRVGIYEPL HQFGMWGEPF KNNIGNGGSM NTPSHIIIPN NQKLDNNNLS EDTSHGTPHM FDQEASTSRH PDKIQRRLAQ NREAARKSRL
101: RKKAYVQQLE TSRLKLIQLE QELDRARQQG FYVGNGIDTS SLGFSETMNP GIAAFEMEYG HWIEEQNRQI CELRTVLHGH VTDVELRSLV ENTMKHYFEL
201: FRMKSAAAKA DVFFVMSGMW RTSAERFFLW IGGFRPSDLL KVLLPHFDVM TDQQVLDVCN LRQSCQQAED ALSQGMEKLQ HTLAECVARG GLGEGNYIPQ
301: VNSAMERLEA LVSFVNQADH LRHETLQQMH RILTTRQAAR GLLALGEYFQ RLRALSSSWA TRHREPT

Best Arabidopsis Sequence Match ( AT5G65210.5 )
(BLAST)

001: MNSTSTHFVP PRRVGIYEPV HQFGMWGESF KSNISNGTMN TPNHIIIPNN QKLDNNVSED TSHGTAGTPH MFDQEASTSR HPDKIQRRLA QNREAARKSR
101: LRKKAYVQQL ETSRLKLIQL EQELDRARQQ GFYVGNGIDT NSLGFSETMN PGIAAFEMEY GHWVEEQNRQ ICELRTVLHG HINDIELRSL VENAMKHYFE
201: LFRMKSSAAK ADVFFVMSGM WRTSAERFFL WIGGFRPSDL LKVLLPHFDV LTDQQLLDVC NLKQSCQQAE DALTQGMEKL QHTLADCVAA GQLGEGSYIP
301: QVNSAMDRLE ALVSFVNQAD HLRHETLQQM YRILTTRQAA RGLLALGEYF QRLRALSSSW ATRHREPT

Arabidopsis Description

TGA1Transcription factor TGA1 [Source:UniProtKB/Swiss-Prot;Acc:Q39237]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.